Pairwise Alignments

Query, 800 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 792 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  129 bits (323), Expect = 8e-34
 Identities = 123/380 (32%), Positives = 176/380 (46%), Gaps = 51/380 (13%)

Query: 324 GGLLSLLLSVLLYSLFSQRQRALALVAQRTAELQVSE----QSLRGTHNQLRSVLDAATQ 379
           G +  LL+SV L  L S+R     L       L V+E    Q+L   +  L + +  +  
Sbjct: 255 GQVRHLLISVDLVFLDSERYLQWTL-------LDVTENRRSQALASRNEILTNAIMNSLD 307

Query: 380 VAIIATNLKG-VVSTFNAGAERMLGYAASEAIGR-LRLEDLVLPEELNLRAQALSLRFGR 437
           VA+   + +G ++ T    +E  LG  A E +   + L    +       A A       
Sbjct: 308 VAVAVLDREGNILRTNRKWSEFALGNGAGEELAAGVGLNYFEVCRRSFPEASATE----- 362

Query: 438 AIAGGQAMFAETVQE-------HGAEPGEWTLLRAD--GSQLVANMLVTAMLDEQGLWVG 488
           A+AG QA+  E +         HG     W LL+A   GS L            QGL   
Sbjct: 363 ALAGMQAVLEERLPVASIEYPCHGPAGERWYLLQATPLGSGL------------QGL--- 407

Query: 489 YLAICIDVTERRRVHEALAARDRLLEKLS---AEVPGGIYQYRLDANGHSCFPYASMGLY 545
            + I +D+T RR+  E L  R  L +KL+   A VPG IY  +L  +G  C PYA  G  
Sbjct: 408 -VTIHMDITARRQAEEGLRQRLMLQDKLARVAASVPGVIYSIKLRPDGTFCIPYAMQGSV 466

Query: 546 DIYEI---DLMQ-LREDASAVFERIHPDDLERVRRSVRYSAEHLSPWREEYRVCLPRAGL 601
           DI+ +   DL + L ED   V  RIH  D ERV   V  SA  ++PW  E+RV  P+ G+
Sbjct: 467 DIFGLRPEDLTEDLTEDLGPVLSRIHGADQERVLAVVLESARTMAPWHCEFRVHHPQGGV 526

Query: 602 RWVRGEATPEVGEQGCTLWHGYLTDISDLKGVEEEL-RALSVTDSLTGIHNRRYFQERLK 660
           RWV  +A P + + GC +WHGY+ D+S  K  + EL R+     +L     R   +ER +
Sbjct: 527 RWVESKAVPRLEDDGCVIWHGYIHDVSARKQADAELMRSRDQLRALNEGLQRVREEERSR 586

Query: 661 IELERAQRDGLPLAVIMLDI 680
           I LE   + G  L V+ L++
Sbjct: 587 ISLEIHDQLGQSLTVLKLEM 606



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 564 ERIHPDDLERVRRSVRYSAEHLSPWREEYRVCLPRAGLRWVR-GEATPEVG----EQGCT 618
           E + P+D ER+RR   +     +P   E+RV     GLR +      P  G     +   
Sbjct: 89  ECVVPEDRERIRRIWLHPPTTAAPGTVEFRVGDSHRGLRHLSLSSGLPGRGGKRRRRSGA 148

Query: 619 LWHGYLTDISDLKGVEEELR 638
           +  G L D+++ K VE  LR
Sbjct: 149 MAMGTLQDVTERKKVEIALR 168