Pairwise Alignments

Query, 274 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 92.4 bits (228), Expect = 9e-24
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 25/262 (9%)

Query: 17  SAQPGGIERIEAWFGSHGYDPHRHDTYSIGRTLAGVQSFHYKGSLRHGIPGNTLVLHPDE 76
           SA P  I  IEA +    ++ H H    IG    GVQ F+++G+      G  +++ PDE
Sbjct: 12  SAYPA-ISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPDE 70

Query: 77  LHDGMAGTDAGFRYRMAYVDPALIQNVLGGQPLPFIAGG---LSSDPRLYHASEAFVQAV 133
           LHDG A ++ G++ ++  ++P  +Q  L    +  + G    +  DP L+H+    +Q +
Sbjct: 71  LHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHS----LQQL 126

Query: 134 DHALE------------PLEEQDALYDLAIALRAVGGKPRGRKRLDYQAAERARAFIMEH 181
            H L             P +    L +    L+    KP G+  L        + +++  
Sbjct: 127 HHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNL-----ALLKEWVLSQ 181

Query: 182 LHVGITLDMLEQASGRERWSLSRDFRTLYGTSPYRFVTLRRLDCLRRMILDGFTLVDAAL 241
           L   I L+ L Q          R F+   G +PY ++   RL+   +++  G    D A 
Sbjct: 182 LDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAY 241

Query: 242 AAGFHDQSHMTRHFTRCYGVPP 263
             GF+DQ+H ++ F   YG+ P
Sbjct: 242 QVGFYDQAHFSKAFKATYGLSP 263