Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1045 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Pseudomonas stutzeri RCH2

 Score =  494 bits (1273), Expect = e-143
 Identities = 328/1028 (31%), Positives = 533/1028 (51%), Gaps = 37/1028 (3%)

Query: 7    FVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGFVTQP 66
            F+ RP+ A V++ +I+L G  ++ KLP+ QYP + +  + IS  YPGASA+ +Q  V Q 
Sbjct: 5    FIDRPIFAWVIALVIMLAGGLSILKLPVNQYPSIAAPAVGISVSYPGASAQTVQDTVVQV 64

Query: 67   ITQAVSSVEGIDYLSS-SSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEKAYD 125
            I Q ++ ++G+ Y+SS S+  G   IT+      +   A  +   K+      LP++   
Sbjct: 65   IEQQLNGIDGLRYISSESNSDGSMTITVTFDQGTNPDIAQVQVQNKLQLATPLLPQEVQQ 124

Query: 126  PVVELSAGDSTAVAYVGFASD--SLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQRLA 183
              + ++      +  +G  S   SL   +L++Y+   ++   S   GV   Q FG Q  A
Sbjct: 125  QGIRVTKAVRNFLIVIGLVSTDGSLDQRDLANYIVANMQDPISRTKGVGDFQVFGAQ-YA 183

Query: 184  MRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVD------TDLTRV 237
            MR+WLD  ++    +T  DV+ A++A N Q + GQ+ G   L   Q++      T L   
Sbjct: 184  MRIWLDPAKLNSFSMTPVDVSTAIQAQNVQISSGQLGGLPALPGQQLNATVIGKTRLQTP 243

Query: 238  EDFRELIIR--NDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVI 295
            E FR ++++  +DG+  VRL D+  VEL       SA  +GKPA  L L      N L  
Sbjct: 244  EQFRNILLKVNSDGSQ-VRLGDVARVELGGETYAVSAHFNGKPAAGLALKLATGANALDT 302

Query: 296  VEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSL 355
            VEG+R+ + +++   PPGV V   Y+T   I ASI  V+ TL+EA ++V LV++L L + 
Sbjct: 303  VEGVRKTIEELKPFFPPGVEVVYPYDTTPVISASITGVMHTLLEAFVLVFLVMYLFLQNF 362

Query: 356  RSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHI-E 414
            R+ L+  +A+P+ +LG  G++ +FGFS+N LT+ AM+LAIGL+VDDAIVVVENV R + E
Sbjct: 363  RATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENVERVMRE 422

Query: 415  EGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSG 474
            EG SP+ A      +I G +I + + L+AV  P+   GG TG ++R+F++T+  A+++S 
Sbjct: 423  EGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSV 482

Query: 475  IVALTLSPVMSSLLLQP-----GQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGG 529
            ++AL  +P + + LL+P       +        +R F      Y R +   L  +     
Sbjct: 483  LMALIFTPALCATLLKPIDKDDHHEKRGFFGWFNRTFERSVNGYERGVKAVLKRKAPFLL 542

Query: 530  VALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAE 589
            + +L+   +  L+        P EDQ  +   + +P  ++   AER    +D +   + E
Sbjct: 543  LYVLIVGVMVVLFTRIPSAFLPEEDQGVLFAQVMTPSGST---AERTQQSIDAMRSYLLE 599

Query: 590  T---------TDTWIINGTDGPAASFGGINLSAWQAR---ERSAAQVQAQLQQAVADIEG 637
                      T T       G ++    I L  W  R   E S   +  + QQ  A    
Sbjct: 600  EEGDIVRSVFTVTGFSFAGRGQSSGIAFIGLKPWSERTNKEDSVFALAQRAQQHFASFRD 659

Query: 638  SSIFAFQVASLP--GSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLD 695
            + +FAF   ++   G++ G    +  R+      L Q  +   Q A  S +   V  +  
Sbjct: 660  AQVFAFAPPAVMELGNATGFNFFLQDRAGVGQQVLQQARDKFMQLASQSPVLTRVRPNTL 719

Query: 696  YNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRL 755
             + P  +V +D  KA  LGIS+  I  +L +  G +Y+N F   GR   V  Q + D R+
Sbjct: 720  RDEPQYQVLIDDEKARVLGISLAEINSTLSIAWGGRYVNDFIDRGRVKKVYLQGVADARM 779

Query: 756  TPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAV 815
             P  L++ YVR + G +VP +     +      +L +++  +A  +   PAPG S G+A+
Sbjct: 780  NPEDLAKWYVRNDAGEMVPFSAFASGEWTYGSPKLSRYNGVSAIEMLGEPAPGYSSGDAM 839

Query: 816  AFLEQLTAELPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLII 875
            A +E++ A+LPPG  + W  +S +    G   +  +  +L+V++L LAA YES   P  +
Sbjct: 840  AEVERIVAQLPPGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIPFSV 899

Query: 876  LVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRA 935
            ++ VPL I GAL    L   +  ++ Q+GLVT IGL +++ IL+V FA  +     +  A
Sbjct: 900  MLVVPLGIVGALAFTMLRGLSNEVFFQVGLVTTIGLSARNAILIVEFAKALH-EQGMSYA 958

Query: 936  AAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFV 995
             A ++A ++RLRP++MT+ A   GV+PL  ASGAGA S+  +G  ++ GML   +  +F 
Sbjct: 959  DAALQACRMRLRPIIMTSLAFILGVVPLAVASGAGAGSKHAIGTGVIGGMLTAAVLAIFW 1018

Query: 996  LPTIYAWL 1003
            +P  Y  +
Sbjct: 1019 IPLFYVMI 1026