Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1056 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Synechococcus elongatus PCC 7942

 Score =  548 bits (1412), Expect = e-160
 Identities = 348/1032 (33%), Positives = 558/1032 (54%), Gaps = 31/1032 (3%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            +   ++F++RPVL  V S LI L GL  +  LPI Q P +    I +S  Y GA AE ++
Sbjct: 3    LSIANIFIKRPVLTTVCSILITLGGLVCLPILPIEQLPDIAPPQIQVSATYVGADAETVE 62

Query: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120
              VT  +   ++ VEG++Y++S+S  G+S I +     R    A  +    V+    +LP
Sbjct: 63   NTVTSILENQINGVEGMEYITSTSAIGQSSIQVYFDPTRSPDLAQVDVNNLVSVAIPQLP 122

Query: 121  EKAYDPVVELSAGDSTAVAYVGFASDS--LSIPELSDYLSRVVEPQFSGIDGVAKVQSFG 178
            +      + ++    + + +  F+S +       +S+YLS  V+P  + + GV +   FG
Sbjct: 123  QAVQQQGIAVTQSSPSILQFYTFSSPTGEFDAQFISNYLSLYVQPALARVKGVGQANLFG 182

Query: 179  GQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLAD--------IQV 230
                +MRLWLD  ++A  G+TA DVA A+++ N     GQV G  V +D        +Q 
Sbjct: 183  NLEYSMRLWLDPNRLASYGLTAEDVASALQSQNQIIPVGQVGGPPVNSDQAYTFILRLQG 242

Query: 231  DTDLTRVEDFRELIIRN--DGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTP 288
               L+ VE F  ++++   DGT LVR++D+G  E  A +   +   DG+P V LG++  P
Sbjct: 243  QGQLSTVEQFNNVVLKTGEDGT-LVRVKDVGRAEEGAQSYSVTLAADGRPGVGLGIYQLP 301

Query: 289  SGNPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVI 348
              N + +  GIR+ L  ++Q  PPG+   L ++   F++AS+ EVL TLV+A+ +V+LVI
Sbjct: 302  GSNAIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVILVI 361

Query: 349  WLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVEN 408
            ++ L   R+ LI  +AIP+S++G    +  FGFS+NLLTL  +VLA GLVVDDAIVVVE 
Sbjct: 362  FIFLQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVVEA 421

Query: 409  VHRHIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAG 468
            +   IEEGK+P+ A++     + G VIA ++ L AV+ P+    G TG ++++FALTL  
Sbjct: 422  ITEKIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALTLTF 481

Query: 469  AVIVSGIVALTLSPVMSSLLLQPGQQH----GAMAAIADRLFGTLSGVYGRVLAYTLAHR 524
             +++S   ALT SP MS+LLL+P +Q     G    + +  F  +   Y + LA     +
Sbjct: 482  TILISTFNALTFSPAMSALLLRPAKQQQGWLGKFFNLFNAGFDRVRIGYSKALAIIDRLK 541

Query: 525  WISGGVALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVM 584
            ++  G+         WL+        P EDQ   L  I  P+ A L Y ++   K+  ++
Sbjct: 542  FLVIGLFAAGLALTGWLFTTTPTGFVPTEDQGYFLGLIIGPEGAPLNYTQKVGQKIQSIL 601

Query: 585  KSIAETTDTWIINGTD--GPAASFG--GINLSAW---QARERSAAQVQAQLQQAVAD-IE 636
            ++    T T +I+G    G   + G    +L  W   +A ++SA  +  ++ Q + + I 
Sbjct: 602  ETEPSVTSTAVISGFSFIGQGNNLGIYFASLKPWDERKAADQSAEAIVGRINQKLFEGIS 661

Query: 637  GSSIFAFQVASLPGSSGGLPVQMVLR----SAQDYPELFQTMEVLKQRARDSGLFAVVDS 692
             + +      ++PG +    VQ ++      A    +  +++  +   AR++ +     +
Sbjct: 662  EAQVRTVLPPAIPGFAAYGGVQFLITDQTGGALSVSQFLESVNKIIGLARENPITRQTFT 721

Query: 693  DLDYNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQD 752
                N+P +++ VDR + A+L I      ++LG  +G QY+N+   FGRSY V  Q+   
Sbjct: 722  PFTANSPQIEIDVDRDRLAALNIDFGEALQTLGSYMGGQYVNQITQFGRSYQVYIQADNG 781

Query: 753  QRLTPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMG 812
             R TP AL++ YV++ DG+ VPL+  + +  +V P  +  ++   +  + +  APG S G
Sbjct: 782  FRATPQALTQIYVKSRDGATVPLSEFLTIRQQVGPLYITHYNLFRSIEVDSFAAPGTSTG 841

Query: 813  NAVAFLEQLTAELP-PGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVD 871
              +  L+    +     F +     +R+ V  G      F   +VV++LVLAA YES VD
Sbjct: 842  QVIEGLKDAFQKANFQRFGNGLVGLAREEVSAGTLAPLIFGLGVVVVFLVLAALYESYVD 901

Query: 872  PLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDN 931
            PLIIL+TVPL+I GAL+ L L    L++Y Q+GLV LIGL SK+ IL+V +ANE  V   
Sbjct: 902  PLIILLTVPLAILGALVFLNLRGIPLDVYAQVGLVMLIGLASKNAILIVDYANE-AVAKG 960

Query: 932  LDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLF 991
            +    A + AA++R RP++MT  +   G  PL+ A GAGA SR+ LG V+  G+LV T+ 
Sbjct: 961  MGYTEAALEAAKLRFRPIVMTAISSLIGFFPLVIAQGAGAASRWSLGTVVFGGLLVATVL 1020

Query: 992  TLFVLPTIYAWL 1003
            +L ++P  Y  L
Sbjct: 1021 SLLIVPANYVIL 1032