Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1044 a.a., transport transmembrane protein from Sinorhizobium meliloti 1021

 Score =  545 bits (1403), Expect = e-159
 Identities = 352/1027 (34%), Positives = 564/1027 (54%), Gaps = 22/1027 (2%)

Query: 3    FTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGF 62
            FT +F+RRP+ ALVV++LI++ GL A   + IR+ P ++   ++++TE+ GAS E +   
Sbjct: 20   FTALFIRRPIFALVVNTLIVVAGLAAWNGVEIRELPQVDQPVVSVTTEFDGASPETIDRE 79

Query: 63   VTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEK 122
            VT  I  AVS V+GI  +SSSS  GRS +TL      D  QA  +    + ++  +LP+ 
Sbjct: 80   VTSVIEGAVSRVQGIKGISSSSSFGRSRVTLEFSDTTDIGQAANDVRDALGRITGQLPDD 139

Query: 123  AYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQRL 182
            A +P +  +  DS  +  +   SD++S+ +++  +   +  + + ++GVA V  +G Q  
Sbjct: 140  ADEPRIVKADSDSQPIMRLALTSDTMSMDDMTLLVENEISDRLAAVEGVADVTVYGDQEK 199

Query: 183  AMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDFRE 242
              R+ L+  ++AGRGVT A++ +A+   +Y    G +        ++   DL   E F  
Sbjct: 200  IFRIDLNQAKLAGRGVTVANLREALSDASYDVPAGSLTSASQDISVRATADLQTPEQFEN 259

Query: 243  LIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIRQL 302
            L++ N+    VRLRD+ TV L      ++   +G+  + LG+      N + I EG+R +
Sbjct: 260  LMLGNN----VRLRDVATVTLGPDTGTSALRSNGREGIGLGIIRQAQSNTVDISEGVRSV 315

Query: 303  LPQIQQT-LPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIA 361
            +  I    LP G  + +  + A FI+ +IHEV   L  A+ IV LVI+L L   R+ LI 
Sbjct: 316  VDAISSDILPTGTELKITSDDAVFINGAIHEVEIALFVAVFIVTLVIYLFLLDWRATLIP 375

Query: 362  VVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPIA 421
             + +P++++G    + + GFS+N+LTLLA+VLA GLVVDDAIVV+EN+ R   EG  P A
Sbjct: 376  TITMPIALIGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENIVRRRAEGLGPRA 435

Query: 422  AALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTLS 481
            AA+ G  E+   V+A T TLAAV+ P+  + G TG LFREF   LA ++++S  V+LTL 
Sbjct: 436  AAVHGTLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSILLSSFVSLTLC 495

Query: 482  PVMSSLLL--QPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLP 539
            P+++S +L  +P +  G M     R     S  Y   L   L    I   VA     +  
Sbjct: 496  PMLASRMLTKEPHEHDGVMQRFGRR----ASAFYRVTLRACLNAPLIVFAVAAFFTAAGA 551

Query: 540  WLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSI---AETTDTWII 596
              +L  + EL P ED++ V+  I +PQ  SLEY +    ++++ ++ +    E ++ + I
Sbjct: 552  LGFLTLKSELTPNEDRSQVMLRINAPQGVSLEYTQAQLRRIEEGLQPLLKSGEISNVFSI 611

Query: 597  NGTDGPAAS-FGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASL--PGSSG 653
            +G  G A S F  + L+ W+ RER+  Q+ A + +A + I     F  Q  SL   G+  
Sbjct: 612  SGQGGSANSGFMVLTLAPWEERERTQGQIVADINRATSKIPSVRAFTIQANSLGIRGAGS 671

Query: 654  GLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAASL 713
            GL V +V     DY +L      L +   D+G F  V  + + N   + V +DR +A+ L
Sbjct: 672  GLQVALV---GNDYTKLGDAAAKLVRAMEDTGRFENVRLNYEANQAQLSVTIDRERASDL 728

Query: 714  GISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSLV 773
            G+ +  +  +L  ++    +    + G +Y V   S  +    P  L   +V+A DG +V
Sbjct: 729  GVDIGGLSWALQAMLDGSSVVDIFVEGEAYPVKLLSSTEPLNDPTDLQNIFVKAGDGRIV 788

Query: 774  PLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE-LPPGFSHD 832
            P++++  ++ +    +L +  Q  A +L A     +++G A++ +E++    LPPG    
Sbjct: 789  PMSSIATVEEKAVAPQLSRESQLRAVSLSAGLKSDLALGEALSMVEEMAEPLLPPGSRVM 848

Query: 833  WQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLAL 892
              +E+    +    L   F  ALV+I+LVLAAQ+ES V  LII+ TVPL +  A+  + +
Sbjct: 849  PLAEAATLDENANGLFVTFGFALVIIFLVLAAQFESFVSGLIIMSTVPLGLACAVFAMIV 908

Query: 893  GWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMT 952
               TLNIY+QIGLV L+G+++K+GIL+V FAN+++ R   D  +AI  AA IRLRPV+MT
Sbjct: 909  TGNTLNIYSQIGLVMLVGIMAKNGILIVEFANQLRDRGQ-DVRSAIENAANIRLRPVMMT 967

Query: 953  TAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRVSTA 1012
              A   G +PL+ ASGAGA +R  LG V+V G+ +  + TL++ P  Y  +AR  +    
Sbjct: 968  MIATVVGAVPLVLASGAGAEARIALGWVLVGGLGLAVVVTLYLTPVAYLVIARFTKPHAD 1027

Query: 1013 RARQLVE 1019
              R+L E
Sbjct: 1028 EERKLQE 1034