Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1061 a.a., multidrug-efflux system transmembrane protein from Sinorhizobium meliloti 1021

 Score =  560 bits (1443), Expect = e-163
 Identities = 351/1043 (33%), Positives = 580/1043 (55%), Gaps = 43/1043 (4%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M F+  FV RPV A V+S +I + GL  M  LPI +YP +    I +  +YPGA+  ++ 
Sbjct: 1    MNFSRFFVDRPVFAGVLSVIIFVAGLIGMTGLPISEYPEVVPPQIVVRAQYPGANPAVIA 60

Query: 61   GFVTQPITQAVSSVEGIDYLSS-SSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRL 119
              V  P+ + ++ VEG+ Y+ S ++  G   +T+   L  D  QA      +V+Q   RL
Sbjct: 61   ETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVSQGEPRL 120

Query: 120  PEKAYDPVVEL--SAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSF 177
            PE+     V    S+ D T V ++   +    I  L +Y    V+ + + +DGV +VQ F
Sbjct: 121  PEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVDGVGQVQIF 180

Query: 178  GGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPG------QVRGQYVLADIQVD 231
            GG   +MR+W+D E+ A RG+ A+D+A AVR  N QA  G       V G  +   +   
Sbjct: 181  GGGDYSMRVWIDPEKAAERGLAASDIANAVRGQNVQAAAGVIGASPSVPGLDLQLSVNAQ 240

Query: 232  TDLTRVEDFRELIIRN-DGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSG 290
              L   EDF ++++++ +  ++ RL D+  VE+ AA     + +D K AV +G+F  P  
Sbjct: 241  GRLKTPEDFADIVVKSGESGEITRLGDVARVEMGAADYSLRSLLDNKAAVGMGVFQAPGS 300

Query: 291  NPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWL 350
            N + I E + +++ +++QT+P GV   + Y+T +F+ ASI  V+ TL+EA+ +VV+V+ +
Sbjct: 301  NAIQISENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIESVIHTLLEAIALVVVVVIV 360

Query: 351  CLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVH 410
             L + R+ +I +VA+P+S++G   +M +FGFS+N L+L  +VLAIG+VVDDAIVVVENV 
Sbjct: 361  FLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 411  RHIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAV 470
            R+I +G SP+ A     +E++GP+IA+ L L AV+ P+  + GLTG  +R+FALT+A + 
Sbjct: 421  RNISQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIST 480

Query: 471  IVSGIVALTLSPVMSSLLLQPGQQHGAMAAIA--------------DRLFGTLSGVYGRV 516
            ++S + +LTLSP +++LLL+    H     +               +R FG  S  YGR 
Sbjct: 481  VISALNSLTLSPALAALLLK--DHHAPKDRLTRVMDGLFGWFFRGFNRFFGASSEAYGRG 538

Query: 517  LAYTLAHRWISGGVALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAE-- 574
            +   L  + +  GV +++      L+        P +D+  ++   + P  A+L+ +E  
Sbjct: 539  VGGILTRKSLVMGVYVVLLGVTFVLFRAVPGGFVPAQDKQYLIGFAQLPDAATLDRSEDV 598

Query: 575  -----RFALKLDQVMKSIAETTDTWIING-TDGPAASFGGINLSAWQAR---ERSAAQVQ 625
                   ALK   V  +IA       ING T+   +    ++L  ++ R   E S   + 
Sbjct: 599  IRRMSEIALKHPGVEHAIA--FPGLSINGFTNSSNSGIVFVSLKPFEERTTPELSGGAIA 656

Query: 626  AQLQQAVADIEGSSIFAFQVASLP--GSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARD 683
             QL Q    I+ + I  F    +   G++GG  +Q+  R+   Y  L    + +  +A  
Sbjct: 657  MQLNQEFGAIQDAFIAMFPPPPVQGLGTTGGFKLQIEDRNGLGYRTLDDATKAVLAKAMA 716

Query: 684  SGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSY 743
            +   A + S    N P +   +DR KA  LG+++  + E+L + +G  Y+N F  FGR+Y
Sbjct: 717  APELAGLYSSFQINVPQLYADLDRTKARQLGVAVTDVFETLQIYLGSLYVNDFNAFGRTY 776

Query: 744  DVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQA 803
             V  Q+    R     + +  VR++ G ++PL+ L+ ++  V   R ++++   A+ +  
Sbjct: 777  SVRIQADASYRSHADDIGKLKVRSQTGEMIPLSALLNVEQTVGAERAIRYNGFLAADING 836

Query: 804  IPAPGVSMGNAVAFLEQLTAE-LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVL 862
             PAPG S G A A +E++ AE LPPG S++W   + Q +  G + +  F  AL+++YLVL
Sbjct: 837  GPAPGFSSGQAQAAIERIAAETLPPGISYEWTDLTYQQILAGNSGILVFPLALLLVYLVL 896

Query: 863  AAQYESLVDPLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAF 922
            AAQYESL+ P+ I++ VP+ I  AL  + L     N++TQIGL+ L+GL +K+ IL+V F
Sbjct: 897  AAQYESLLLPIAIILIVPMGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEF 956

Query: 923  ANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIV 982
            A E+++  + +  +A + A+++RLRP+LMT+ A   GV+PL+ ++GAGA  R  +GV + 
Sbjct: 957  ARELELSGS-NAVSAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVF 1015

Query: 983  CGMLVGTLFTLFVLPTIYAWLAR 1005
             GM+  T F +F+ P  Y  + +
Sbjct: 1016 AGMIGVTAFGIFMTPVFYVLIRK 1038



 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 79/368 (21%), Positives = 156/368 (42%), Gaps = 21/368 (5%)

Query: 666  DYPELFQTMEVLKQRARDSGLFAV-VDSDLDYNNPVVKVRVDRAKAASLGISMQAIGESL 724
            +Y   +  + V  + AR  G+  V +    DY+   ++V +D  KAA  G++   I  ++
Sbjct: 154  NYLRNYGVLNVKDRLARVDGVGQVQIFGGGDYS---MRVWIDPEKAAERGLAASDIANAV 210

Query: 725  GVLVGEQYLNRFALFGRSYDV------IPQSIQDQRLTPAALSRQYVRA-EDGSLVPLAT 777
                G+       + G S  V      +  + Q +  TP   +   V++ E G +  L  
Sbjct: 211  R---GQNVQAAAGVIGASPSVPGLDLQLSVNAQGRLKTPEDFADIVVKSGESGEITRLGD 267

Query: 778  LVRLDIEVAPNRLLQF-DQQNASTLQAIPAPGVSM----GNAVAFLEQLTAELPPGFSHD 832
            + R+++  A   L    D + A  +    APG +      N    + +L   +P G  ++
Sbjct: 268  VARVEMGAADYSLRSLLDNKAAVGMGVFQAPGSNAIQISENVHKVMAELKQTMPDGVDYE 327

Query: 833  WQSESRQYVQEGF-ALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLA 891
               ++ Q+V+    +++   L A+ ++ +V+    ++    +I LV VP+SI G    + 
Sbjct: 328  IVYDTTQFVRASIESVIHTLLEAIALVVVVVIVFLQTWRASIIPLVAVPVSIVGTFAVMY 387

Query: 892  LGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLM 951
            +   ++N  +  GLV  IG++    I++V    E  +   L    A  RA Q    P++ 
Sbjct: 388  VFGFSINALSLFGLVLAIGIVVDDAIVVVENV-ERNISQGLSPVQATYRAMQEVSGPIIA 446

Query: 952  TTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRVST 1011
                +    +PL F +G          + I    ++  L +L + P + A L +DH    
Sbjct: 447  IALVLVAVFVPLAFITGLTGQFYRQFALTIAISTVISALNSLTLSPALAALLLKDHHAPK 506

Query: 1012 ARARQLVE 1019
             R  ++++
Sbjct: 507  DRLTRVMD 514