Pairwise Alignments
Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440
Subject, 1050 a.a., efflux RND transporter permease subunit from Parabacteroides merdae CL09T00C40
Score = 535 bits (1377), Expect = e-156
Identities = 329/1029 (31%), Positives = 564/1029 (54%), Gaps = 38/1029 (3%)
Query: 5 DVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGFVT 64
++F+RRP+L+ V+S +I+ +GL A+ LPI Q+P + ++T++ Y GA+A++M V
Sbjct: 3 EIFIRRPILSGVISVVIVFLGLLAITSLPITQFPDIVPPSVTVTARYTGANADVMAKTVA 62
Query: 65 QPITQAVSSVEGIDYLSS-SSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEKA 123
P+ +A++ V G+ Y+++ + G SL T+ + D A +V V LPE+
Sbjct: 63 TPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVTTVLDELPEEV 122
Query: 124 YDPVVELSAGDSTAVAYVGFASDSLSIPE--LSDYLSRVVEPQFSGIDGVAKVQSFGGQR 181
V ++ + Y+ S S E + ++ + + IDGV V+ G +
Sbjct: 123 IRAGVITEKEVNSMLMYLNIMSTDSSHTEKFVYNFADINILRELKRIDGVGFVEIMGSRD 182
Query: 182 LAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQV---------RGQYVLADIQVDT 232
AMR+WL+ ++A ++ +V A+R+ N +A PG+ + QYVL Q
Sbjct: 183 YAMRVWLNPNRLAAYNMSPQEVTAAIRSQNIEAAPGKTGISSDKIPQQLQYVL---QYSG 239
Query: 233 DLTRVEDFRELIIRN--DGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSG 290
+ E++ E++++ DG+ ++RL+D+ T+E + + DGKP+ + + P
Sbjct: 240 KFSTPEEYGEIVLKALPDGS-VLRLKDVATIEFDSEDYNMISMTDGKPSASIMIKQRPGS 298
Query: 291 NPLVIVEGIRQLLPQIQQT-LPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIW 349
N +++ I+ + +I+++ PG+ ++Y+ +RF+DASI VLRTL+EA L+V +V++
Sbjct: 299 NAREVIQNIKAKMEEIKESSFAPGMDYNISYDVSRFLDASISVVLRTLLEAFLLVFIVVY 358
Query: 350 LCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENV 409
L L RS LI +A+P+S++G M M GFS+N+LTL A+VLAIG+VVD+AIVVVE V
Sbjct: 359 LFLQDFRSTLIPAIAVPVSLVGTFFFMQMLGFSINMLTLFALVLAIGIVVDNAIVVVEAV 418
Query: 410 HRHIEEGKSPIAAAL-AGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAG 468
H + K P A A A REI G +IA+TL ++AV+ P+G M G G +R+F+LTLA
Sbjct: 419 HVKMHNEKLPPAKATEAAIREIGGAIIAITLVMSAVFVPVGFMSGTVGIFYRQFSLTLAV 478
Query: 469 AVIVSGIVALTLSPVMSSLLLQP-GQQHGAMAAIADRLFGTLSGVYGRV-------LAYT 520
A+++SG+ ALTLSP + +L+L+P ++ R F + Y + L
Sbjct: 479 AIVISGVNALTLSPALCALMLKPVSHDKKVKKSLLARFFDGFNKRYDHLERRYKINLRLF 538
Query: 521 LAHRWISGGVALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKL 580
L R+++ ++ CL+ + + P EDQ + + +P A+LE +E K+
Sbjct: 539 LNRRFLTYASLIIFCLATWGMTFVLPSGFIPNEDQGMIYVNVDAPPGATLERSEAALSKV 598
Query: 581 DQVMKSIAETTDTWIING------TDGPAASFGGINLSAWQARERSAAQVQAQLQQAVAD 634
+ + E + G T+G + G INL W RE++A ++ V+
Sbjct: 599 QAALLPLEEVETVSTLAGYSLMTETEGASFGMGMINLKPWNEREQTAEELMRVYADRVSH 658
Query: 635 IEGSSIFAFQVASLP--GSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDS 692
I+ + I F ++P G++ G +++ ++A + EL + + + + V S
Sbjct: 659 IKDADIQFFLPPTVPGFGNASGFELRLQDKTAGTFAELDEVAKSFVAKLNADPRLSGVTS 718
Query: 693 DLDYNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQD 752
+ N P +RVD AKAA LGI + E+L VG Y + F FG+ Y V+ Q+ +
Sbjct: 719 GFNPNFPQYLLRVDLAKAAKLGIDVNESMETLQSYVGSFYSSNFVRFGQMYKVMLQAAPE 778
Query: 753 QRLTPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMG 812
R+ P L Y + ++G++VP + + ++ P+++ +++ ++ + APGVS G
Sbjct: 779 YRMNPEDLFGLYAKNKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEQAPGVSSG 838
Query: 813 NAVAFLEQLTAE-LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVD 871
A+ +E++ AE LP G+ +W +R+ + G + F LV +YL+LAAQYESL+
Sbjct: 839 EALEAVEEIAAEVLPRGYDIEWSGVAREEKESGGQSLVIFAICLVFVYLLLAAQYESLLL 898
Query: 872 PLIILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDN 931
PL +++++P + G+ L L NIY Q+ LV LIGL+ K+ IL++ AN+ + ++
Sbjct: 899 PLPVILSLPAGVFGSFLLLYAVGLENNIYAQVALVMLIGLLGKNAILIIEVANQCR-KEG 957
Query: 932 LDRAAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLF 991
+ A ++ A RLRP+LMT+ A G++PL ASGAGA +G GML+GT
Sbjct: 958 VSIMGAAIQGATSRLRPILMTSFAFISGLIPLAVASGAGALGNRSIGTAAAGGMLIGTFV 1017
Query: 992 TLFVLPTIY 1000
+F++P +Y
Sbjct: 1018 GIFLIPGLY 1026
Score = 50.4 bits (119), Expect = 6e-10
Identities = 58/284 (20%), Positives = 122/284 (42%), Gaps = 22/284 (7%)
Query: 740 GRSYDVIPQSIQ------DQRLTPAALSRQYVRA-EDGSLVPLATLVRLDIEVAP-NRLL 791
G S D IPQ +Q + TP ++A DGS++ L + ++ + N +
Sbjct: 221 GISSDKIPQQLQYVLQYSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMIS 280
Query: 792 QFDQQNASTLQAIPAPGVS----MGNAVAFLEQLT-AELPPGFSHDWQSESRQYVQEGFA 846
D + ++++ PG + + N A +E++ + PG ++ + +++ +
Sbjct: 281 MTDGKPSASIMIKQRPGSNAREVIQNIKAKMEEIKESSFAPGMDYNISYDVSRFLDASIS 340
Query: 847 -----LMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLALGWATLNIYT 901
L+ AFL +V+YL L + LI + VP+S+ G + + ++N+ T
Sbjct: 341 VVLRTLLEAFLLVFIVVYLFL----QDFRSTLIPAIAVPVSLVGTFFFMQMLGFSINMLT 396
Query: 902 QIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGVL 961
LV IG++ + I++V + + L A A A + ++ T M+ +
Sbjct: 397 LFALVLAIGIVVDNAIVVVEAVHVKMHNEKLPPAKATEAAIREIGGAIIAITLVMSAVFV 456
Query: 962 PLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLAR 1005
P+ F SG + + +++ + L + P + A + +
Sbjct: 457 PVGFMSGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALMLK 500