Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  597 bits (1538), Expect = e-174
 Identities = 358/1015 (35%), Positives = 567/1015 (55%), Gaps = 25/1015 (2%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M  +DV V+RPV+A+V+S L+ + GL +  KL +R+ P +ES  +T+ST Y GASA +M+
Sbjct: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60

Query: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120
              +T+ +   ++ + GID ++S+++ G S IT++ +L  + T+ +++    V + + RLP
Sbjct: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120

Query: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180
            E A DPVV    G      YV  +S  +   +L+DY  RV+E +FS I GV+ +   GG 
Sbjct: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180

Query: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240
               M + L  EQMAGR VT  D+  A+R  N +   GQVR    +  ++        +DF
Sbjct: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240

Query: 241  RELIIR--NDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEG 298
              L++R  +DGT +  L+D+  V + A    ++   DG   + LG+      NPLV+ + 
Sbjct: 241  DYLVVRTASDGTPIY-LKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQE 299

Query: 299  IRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSV 358
            + + + +IQ  LP G  + + +++  FID SI+EV  TL     +VVLV+++ +G +R+ 
Sbjct: 300  VHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRAT 359

Query: 359  LIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKS 418
            LI  V +P+S++ A     MFG+S+NLLTL+A++LAIGLVVDDAIVVVEN+  HIE+G+ 
Sbjct: 360  LIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEE 419

Query: 419  PIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVAL 478
            P+ AA  G RE+   V+A T  L  V+ PI  M G+ G LF EF++ LA +V+ S ++AL
Sbjct: 420  PLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIAL 479

Query: 479  TLSPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSL 538
            TL+PV+SS LL+   +        DR F  +  +Y   + + +  R ++  V L      
Sbjct: 480  TLTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGS 539

Query: 539  PWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIING 598
             WL      +LAP ED+  +   +K  +  S     R    +D V   +       ++  
Sbjct: 540  VWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSY---NRMTANMDIVEDRLMPLLGQGVLRS 596

Query: 599  TDGPAASFGG----------INLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASL 648
                A +FGG          + L  W+ R  +A Q    + +A+ DI    +       +
Sbjct: 597  FSVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPM----M 652

Query: 649  PGSSG--GLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVD 706
            PG  G    PVQ VL    DY ELF+  +VLK++A  S +    D D     P + V VD
Sbjct: 653  PGFRGQSSEPVQFVL-GGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVD 711

Query: 707  RAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVR 766
            + +AA LGIS+  + ++L V++G +    +   G  YDV  +  ++       LS+ Y+R
Sbjct: 712  KERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMR 771

Query: 767  AEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE-L 825
            +  G LV L T+  ++   +  RL   ++Q + TL+A  + G ++G A+ FLE  + E L
Sbjct: 772  SAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELL 831

Query: 826  PPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICG 885
            P   S  +  ES+ + +   ++   F  AL+V YLVLAAQ+ES ++PL+++ TVP+ + G
Sbjct: 832  PKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFG 891

Query: 886  ALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIR 945
              L L +    +NIY+QIG++ LIG+++K+GIL+V FAN+++ R  L    AI+ A+  R
Sbjct: 892  GFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GLALDKAIIDASTRR 950

Query: 946  LRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIY 1000
            LRP+LMT      G +PL+F++GAG+ SR  +G V+  GM   T  TLFV+P +Y
Sbjct: 951  LRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMY 1005