Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1031 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  644 bits (1660), Expect = 0.0
 Identities = 379/1028 (36%), Positives = 608/1028 (59%), Gaps = 15/1028 (1%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M  TD+ V+RPV A V+S L++  GL A GKLP+R+YP ++   ++I T Y GASA +++
Sbjct: 1    MILTDLSVKRPVFASVISLLLVAFGLVAFGKLPLREYPNIDPPIVSIETNYRGASAAVVE 60

Query: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120
              +TQ I   +S VEGI ++SSSS  GRS +TL   ++R+   A  +   +++ +   LP
Sbjct: 61   SRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISGLLDNLP 120

Query: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180
            E+A  P V+ + G    + ++   SD ++  EL+DY  R +  + S +DGV+ ++  GG+
Sbjct: 121  EEADPPEVQKANGGDEVIMWLNLESDQMTTLELTDYTRRYLADRLSVVDGVSMIRIGGGK 180

Query: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240
              AMR+WLD + +A R +T ADV  A+RA N +   G +  +     ++++      EDF
Sbjct: 181  VYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLERSYRSAEDF 240

Query: 241  RELII-RNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGI 299
              L+I + +   LV+L D+  VE+ +   +     + +  + LG+    + N L +  G+
Sbjct: 241  ANLVIVQGEDGYLVKLGDVARVEVGSDEDRIMFRGNRESMIGLGVSKQSTANTLEVARGV 300

Query: 300  RQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVL 359
              L+ +I  TLP G+ +  +Y+++ FI+ASI EV +TL  AM++V++VI+L LGS+R++L
Sbjct: 301  NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSVRAML 360

Query: 360  IAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSP 419
            I  + +P+S+LG   ++   G+++NLLTLLAM+LAIG+VVDDAIV++EN+HR IEEG SP
Sbjct: 361  IPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP 420

Query: 420  IAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALT 479
            + AA  GARE+A  VIA TL L AV+ PI  + G  G LF+EFA+ ++ AVI S IVALT
Sbjct: 421  LKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSIVALT 480

Query: 480  LSPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLP 539
            LSP+M + LL+P +Q   +    D +   +S  Y   L   +    +   + L+   S  
Sbjct: 481  LSPMMCAKLLKPAEQDSWLVRKVDSIMTGISRRYQSSLEGAMTKPVLMLVIVLIALGSSV 540

Query: 540  WLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTD--TWIIN 597
            +L     +E AP ED+ ++   +  PQ AS EY E +  +++  +  + ++ D    +I 
Sbjct: 541  FLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMTEVESRLMPLVDSGDIKRLLIR 600

Query: 598  GTD--GPAASFGG----INLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASLPGS 651
                 G AA F      I L  W  R R   +V   + + +AD+ G   F     +  G 
Sbjct: 601  APRGFGRAADFSNGMAIIVLEDWGQR-RPMKEVIGDINKRLADLAGVQAFPVMRQAF-GR 658

Query: 652  SGGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAA 711
              G PVQ V+     Y EL    +++ Q+  ++     +D D     P ++V +DR +AA
Sbjct: 659  GVGKPVQFVI-GGPSYEELAAWRDIMMQKVAENPKLLGLDHDYKETKPQLRVVIDRDRAA 717

Query: 712  SLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAE-DG 770
            SLG+S+  IG +L  ++G + +  F   G  YDVI +  +  + T A L   YVR+E   
Sbjct: 718  SLGVSISNIGRTLESMLGSRLVTTFMRDGEEYDVIVEGERSNQNTAADLQNIYVRSERTK 777

Query: 771  SLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLT-AELPPGF 829
             L+PL+ LV ++     + L ++++  A T++A  A G S+G A+ +L Q+  A LP   
Sbjct: 778  ELIPLSNLVTVEEFADASSLNRYNRMRAITIEASLADGYSLGEALDYLNQVARANLPAEA 837

Query: 830  SHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLP 889
               ++ +S  Y + G ++ + FL AL +++LVLAAQ+ES + P++I++TVPL+  GALL 
Sbjct: 838  VISYKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALLG 897

Query: 890  LALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPV 949
            L     +LNIY+QIG++ L+GL +K+GIL+V FAN+++ +  +D   AI++A+  RLRP+
Sbjct: 898  LWFTGQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDK-GVDFDRAIIQASCQRLRPI 956

Query: 950  LMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRV 1009
            LMT      G +PL+ A+GAGA +RF +GVV++ G+++ TLFT++V+PT Y   AR+   
Sbjct: 957  LMTGITTAAGAVPLVLATGAGAETRFVIGVVVLAGIMLATLFTIYVIPTAYGLFARNSGS 1016

Query: 1010 STARARQL 1017
              A A+QL
Sbjct: 1017 PEAIAQQL 1024