Pairwise Alignments

Query, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1055 a.a., multidrug efflux RND transporter permease subunit from Burkholderia phytofirmans PsJN

 Score =  523 bits (1346), Expect = e-152
 Identities = 338/1026 (32%), Positives = 549/1026 (53%), Gaps = 28/1026 (2%)

Query: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60
            M+F   F+ RP+ A V+S ++++ G  AM  LPI Q+P +   TIT+S  YPGASAE++ 
Sbjct: 1    MKFAHFFIDRPIFASVLSIILVVAGTVAMFNLPIAQFPDIAPPTITVSATYPGASAEVVA 60

Query: 61   GFVTQPITQAVSSVEGIDYL-SSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRL 119
              V  P+ Q V+  + + Y+ SSSS  G   +T    +  D + A  +   +VN     L
Sbjct: 61   QNVAAPLEQQVNGADNMMYMNSSSSSTGNMTLTAYFNIGTDPSLAQVDVQNRVNLALPTL 120

Query: 120  PEKAYDPVVELSAGDSTAVAYVGFASDSLSIPE--LSDYLSRVVEPQFSGIDGVAKVQSF 177
            P+      V +    S  +  +   S   +  +  +++Y +  V      I G  +   F
Sbjct: 121  PDSVTAQGVSVQKRSSAFMMVIAIYSPDNAFDQSYVANYANVYVLDALKRIPGANQASIF 180

Query: 178  GGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQ------VD 231
            G    AMR+W+  ++MA   +T ADV QA+   N Q + G++      A +Q        
Sbjct: 181  GSADYAMRIWIKPDRMAKLSITVADVQQAISNQNQQFSAGRLGQSPTNAPVQQTFPVATK 240

Query: 232  TDLTRVEDFRELIIRNDGTDL--VRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPS 289
              +T+  DF  +I+R    D   +R++DIG  EL A         +GK A  + ++  P 
Sbjct: 241  GRMTKPADFDNIILRAGSGDASTIRIKDIGHAELGAKDYSLRGRYNGKTATLIAVYQQPG 300

Query: 290  GNPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIW 349
             N L + + +   L Q+Q+  PPG+   +A +T  F+  SI EV+ TL +A+++V+LV++
Sbjct: 301  ANALQVAKQVHATLEQLQKAFPPGLKYEVALDTTEFVQESIGEVIHTLRDAVILVILVVF 360

Query: 350  LCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENV 409
            + L S R+ L+ ++A+P+S+LGA   ML+FGFS+N+LTL  MVLAIG+VVDDAIVV+ENV
Sbjct: 361  IFLQSFRATLVPLLAVPVSILGAFIGMLVFGFSVNMLTLFGMVLAIGIVVDDAIVVIENV 420

Query: 410  HRHIEE-GKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAG 468
             R++ E G  P  AA     E+ GPVIA+ L L AV+ P+  + G+TG L+++FA+T+A 
Sbjct: 421  ERNMTEFGLPPKEAAKHAMDEVTGPVIAIVLVLLAVFIPVAFLSGITGQLYKQFAVTIAV 480

Query: 469  AVIVSGIVALTLSPVMSSLLLQPG-QQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWIS 527
            +V++SGIVALTLSP ++++LL+PG  +        ++ F  L+  YGR  A  LA R ++
Sbjct: 481  SVVISGIVALTLSPALAAILLKPGTHKKNRFFLWFNKRFDRLTQGYGR--AVQLAIRRVA 538

Query: 528  GGVALLVCL--SLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQ--- 582
              + L+V +  +   L+        P EDQ  +L A+  P  ASL+     + + +Q   
Sbjct: 539  LSILLIVAMVAATAGLFKHIPSSFLPTEDQGYLLGAVVLPDAASLDRTGNLSQRAEQWFA 598

Query: 583  ---VMKSIAETTDTWIINGTDGPAASFGGINLSAWQAR-ERSAAQ-VQAQLQQAVADIEG 637
                +KS+A      +I+      A    I L  ++ R E   AQ +     +A +    
Sbjct: 599  KQPAVKSVAAPIGYSLIDSQYKSNAGTLFITLKGFKDRGENGTAQDLIRDANKAFSGYTD 658

Query: 638  SSIFAFQVASLP--GSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLD 695
              +      S+P  G++GG    +       Y  L + +     +AR +     V+S ++
Sbjct: 659  GVVVPLNPPSIPGLGTTGGFEFWLQSTGDGSYQNLEEKVRAFIAKARQNPALRGVNSTIN 718

Query: 696  YNNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRL 755
             N+  + V VDR +A SLG+ +Q I  +L  + G  Y+++F    R + VI Q+    R 
Sbjct: 719  TNSRQLLVEVDRERAESLGVPIQDIYAALQTMFGSSYVSQFPKSSRLFQVIVQAEPQYRT 778

Query: 756  TPAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAV 815
             P  + + YVR   G +VP+  +  +      + + +F+   A+ +    APG S G ++
Sbjct: 779  QPDDIQQLYVRNRSGDMVPIKAVTTVRFVPGADIVTRFNNFPAAKITGDAAPGHSSGESI 838

Query: 816  AFLEQLTAE-LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLI 874
            A +EQ+  E L  G+S+ W  ++ +  Q G   +  F  AL++++L+LAAQYE    P+ 
Sbjct: 839  AAMEQIAHEVLGEGYSYAWSGQAYEEKQAGSTAILVFGFALLMVFLILAAQYEKWSLPIG 898

Query: 875  ILVTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDR 934
            +L+ VP +I GAL+ + L     ++Y QIGL  LI L +K+ IL+  FA E++ ++ L  
Sbjct: 899  VLLAVPFAIFGALIGILLRGMEDDVYFQIGLTVLIALAAKNAILIFEFAVEMREKEALSP 958

Query: 935  AAAIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLF 994
              A ++AA++RLRP++MT+ A   G +PL  ASGA A SR  LG  ++ GML  T+  LF
Sbjct: 959  YDAALKAAKLRLRPIIMTSLAFILGCVPLAIASGASAASRRSLGTGVIFGMLGATVIALF 1018

Query: 995  VLPTIY 1000
             +P  +
Sbjct: 1019 FIPMFF 1024