Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 417 a.a., RND transporter MFP subunit from Pseudomonas fluorescens FW300-N2E3

 Score =  103 bits (257), Expect = 8e-27
 Identities = 95/380 (25%), Positives = 166/380 (43%), Gaps = 34/380 (8%)

Query: 16  ALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPG 75
           A+ A   +   G  P  AA  PA KV++A   +  +      +G LEA   V++   + G
Sbjct: 13  AVLAMLVMSACGKTPGTAAAMPAAKVSVAKVLEQPVNEWDDFTGRLEAPETVEIRPRVSG 72

Query: 76  RITRIAFESGQTVAAGQLLVQLNDAPEQ-------ALRVQLQARLRNADVVLQRSRKLRA 128
           +I  +AF  G  V  G LL Q++  P Q       AL  Q +A    ++   QR  +LR 
Sbjct: 73  QIDEVAFTEGALVKKGDLLFQIDPRPFQAEVRRLEALVAQGRANATRSENEAQRGERLRT 132

Query: 129 MNAVSQELLDNAATAVDVARGELQHVEAL-------IAQKAIRAPFAGKLGIRRVHQGQY 181
            NA+S EL D+ ++A   AR  +  ++A        ++   + AP +G++    +  G  
Sbjct: 133 SNAISAELADSRSSAAQEARAAVGALQAQLDLAKLNLSFTRVTAPISGRVSRAEITAGNL 192

Query: 182 LAAGET-IVSLADISQLHVNFALGE-------QAAPEVHAGQV--LALTVDAVRGQDFQA 231
           + A  T + S+    +++  F   E       Q A +   GQ   + L +    G     
Sbjct: 193 VTADVTALTSVVSTDKIYAYFDADERVYLKYTQLARQGQRGQTTPVYLGLSNEEGNPHLG 252

Query: 232 RVVAVDPVVS-TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAY 290
           ++  VD  V+     ++ +A   N +G+  PG+YA ++L  +   + + + + A+     
Sbjct: 253 QMNFVDNQVNPKTGTIRGRAVFDNSKGEYTPGLYARLKLVGSGTYSAVLINDEAVGTDLG 312

Query: 291 GQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEP 350
            + V V   D +   R     V  G + +G   + SGL   D ++V G  ++  G PV P
Sbjct: 313 KKFVLVMDADNKSAYRA----VELGPKIEGLRIVRSGLNKDDTIIVKGLQRVRPGSPVTP 368

Query: 351 -----VAQDSLQASQGGRQS 365
                 +Q++L A    RQ+
Sbjct: 369 EVIPMASQETLAALAQQRQA 388