Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 409 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  101 bits (251), Expect = 4e-26
 Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 37/370 (10%)

Query: 6   LLAWAGAVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVN 65
           L+A    +  A   A     SG  PPA        V++A   + Q+      +G LEA  
Sbjct: 12  LIALTVLITAACGKAPEATQSGMPPPA--------VSVAEVIEQQVTEWDELTGRLEAPE 63

Query: 66  QVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRS-- 123
            V++   + G I + AFE G  V  G LL Q++  P QA   +LQA+L+ A  + QR+  
Sbjct: 64  SVEIRPRVSGFIDKAAFEEGALVKKGDLLFQIDPRPFQAEVKRLQAQLQQARAIQQRTVA 123

Query: 124 -----RKLRAMNAVSQELLDNAATAVDVAR-------GELQHVEALIAQKAIRAPFAGKL 171
                 +LR  NA+S EL D   +A   AR        +L   +  ++   + AP  G++
Sbjct: 124 EAERGERLRQKNAISAELADARVSAASEARSATAAIQAQLDRAQLDLSFTRVTAPIDGRV 183

Query: 172 GIRRVHQGQYLAAGETIV-SLADISQLHVNFALGE-------QAAPEVHAGQV--LALTV 221
           G   +  G  + A E ++ +L    +++  F   E       + A     G+   + L +
Sbjct: 184 GRALITSGNLVNASEALLTTLVSTDKVYAYFEADERTYLKYRELARNGDRGETTPVYLGL 243

Query: 222 DAVRGQDFQARVVAVDPVVS-TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAV 280
            +  G      +  VD  V      ++ +A   N  G   PG+YA ++L  +     + +
Sbjct: 244 SSEDGHPHLGHMDFVDNQVDPRTGTIRGRAVFDNRDGSFTPGLYARLKLVGSATYDAVLI 303

Query: 281 PETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQL 340
            + A+      + V V  +D   GT V+   V  G + +G   + SGL  G+ +VV+G  
Sbjct: 304 KDVAVGTDLGKKFVLVLAED---GT-VAYRPVELGPKLEGLRIVRSGLAKGESIVVNGLQ 359

Query: 341 KLSDGMPVEP 350
           ++  G PV+P
Sbjct: 360 RVRPGSPVQP 369