Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 413 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  100 bits (250), Expect = 5e-26
 Identities = 88/349 (25%), Positives = 156/349 (44%), Gaps = 29/349 (8%)

Query: 27  GSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQ 86
           G  P   A      V +A  EQ +      A G +  +N V + + + G +  + FE GQ
Sbjct: 44  GGRPGFGAFGGPVPVRVAKVEQGEFEVFNKALGSVTPLNTVNLRSRVGGELVELRFEEGQ 103

Query: 87  TVAAGQLLVQLNDAPEQALRVQLQ-------ARLRNADVVLQRSRKLRAMNAVSQELLDN 139
            V  G LL  ++  P +    Q +       A+L+NA V  +R R L A ++++++ LD 
Sbjct: 104 RVKKGDLLAVIDPRPYKVALQQAEGTLQQNRAQLKNAQVDFERYRGLFADDSIAKQTLDT 163

Query: 140 AATAVDVARGELQHVEALIAQKA-------IRAPFAGKLGIRRVHQGQYLAAGET--IVS 190
               V   +G L   +A + +         IR+P  G++G+R++  G  +AA +T  +V 
Sbjct: 164 QEALVSQYQGTLAANQASVNEARLNLEFTQIRSPIDGRVGLRQLDVGNLVAANDTTPLVV 223

Query: 191 LADISQLHVNFALGE----QAAPEVHAGQVLALTVDAVRGQDF---QARVVAVDPVV-ST 242
           +     + ++F L E            G  LA+ +   RG+     +  + ++D  + +T
Sbjct: 224 ITQTQPMSISFTLPEGDLLPVLTRYRQGDKLAVQIWD-RGEKLMFGEGLLESIDNQIDAT 282

Query: 243 ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQ 302
              ++++A   N Q  L P  +  VRL     S  + +P  A+ + + G   +V  +D +
Sbjct: 283 TGTLRLKARFDNEQELLIPNQFVNVRLRVETLSDAVLIPSAALQFGSRGTFAYVVGEDNK 342

Query: 303 HGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEPV 351
              R+ +   + GE       +  GL  G+RVV+ G  +L DG  VE V
Sbjct: 343 VQLRLLKAGPSNGET----TVVLEGLEVGERVVMEGTDRLRDGAEVEVV 387