Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  138 bits (348), Expect = 2e-37
 Identities = 88/316 (27%), Positives = 164/316 (51%), Gaps = 6/316 (1%)

Query: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96
           PA  V   + +  Q+++     G+L+A   V +AAE+ G++  IA ++ Q V  GQ+L++
Sbjct: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89

Query: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156
           L+D   QA  V+ +A L++    L    +L   NA++   +D     V++ +  L   +A
Sbjct: 90  LDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQA 149

Query: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216
            +A   I APF G +G     +G++++AG  +++L ++S + ++  + E+  P++  G  
Sbjct: 150 NLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMK 209

Query: 217 LALTVDAVRGQDFQARVVAVDPVVSTARL-VQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275
           +  + +A     F+  VVAVD  ++   L ++V+   PNP  +L+PGM    R+     S
Sbjct: 210 VQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS 269

Query: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVV 335
             + +P  A+ Y+   + V+V  +D        R +V+ G R + +V I  GL  G+++V
Sbjct: 270 API-IPVQALEYSGTKRFVYVIGED----NVAKRREVSLGARVENQVVIEKGLQIGEKIV 324

Query: 336 VSGQLKLSDGMPVEPV 351
           V G + + D   V  V
Sbjct: 325 VQGIVNMRDNARVSEV 340