Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (454), Expect = 1e-49
 Identities = 113/320 (35%), Positives = 171/320 (53%), Gaps = 2/320 (0%)

Query: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96
           P   V + TA  V       A G +E    V +  E  G I +I FESG  VA  Q LV 
Sbjct: 40  PEFPVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVL 99

Query: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156
           L+ A E+A     +ARL  A    +R + L A  ++S+E  D A  +      +++ ++A
Sbjct: 100 LDSAVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKA 159

Query: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216
            IA++ I+APFAG +GIR V  GQYL  G  IV L D S + + F + ++    +   Q 
Sbjct: 160 TIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQE 219

Query: 217 LALTVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275
           + + VDA     F+  + A++P VS  + L+QVQA +PN  G+L+ GM+A   +   +  
Sbjct: 220 VDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLE 279

Query: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVV 335
             + +P+TAITYT YG  V++ +++     RV +  V  GER +    I  G+ PGD VV
Sbjct: 280 NQVTLPQTAITYTLYGDNVYIVSEE-NGEKRVQQHVVKVGERSESIAHILEGVKPGDVVV 338

Query: 336 VSGQLKLSDGMPVEPVAQDS 355
            +GQ++LS+G  V  V  D+
Sbjct: 339 TTGQVRLSNGAKVRIVESDA 358