Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 398 a.a., transporter from Sinorhizobium meliloti 1021

 Score =  100 bits (250), Expect = 5e-26
 Identities = 91/326 (27%), Positives = 154/326 (47%), Gaps = 11/326 (3%)

Query: 38  ATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQL 97
           A  V +  AE+  +  +  A G  EA+  V V     G +T I  +SG  +  GQ++ +L
Sbjct: 74  APLVVVKPAERAVVNDRLNAIGNGEAIRSVTVTPTATGNLTEILVKSGDRITEGQVIARL 133

Query: 98  NDAPEQALRVQLQARLR--NADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVE 155
            D+ +Q +  + QARL   +A   ++R R L    AV+   + ++  A+  A   L+  E
Sbjct: 134 -DSDDQMIAAE-QARLTRDSAREKVERYRNLSTARAVTAVEVRDSEIALQAAELALKTAE 191

Query: 156 ALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQ 215
             + ++ I AP  G +GI  V+ G Y+     I  + D SQ+ V+F + E+ A ++   Q
Sbjct: 192 LDLKRRDIVAPSKGVVGIITVNIGDYVTTSTPIAVVDDRSQILVDFWVPERFAGKISVDQ 251

Query: 216 VLALTVDAVRGQDFQARVVAVDPVVS-TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQP 274
            +  +  A  G+  Q  V A+D  +   +R ++V+A L NP   L+ GM   V + A   
Sbjct: 252 PVTASAIAQPGRALQGVVHAIDNRLDPESRTLRVRARLENPDDMLRAGMSFSVTV-AFDG 310

Query: 275 STVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRV 334
                V   AI +++ G  ++        G +  RV +   +R   +V + + L  GDRV
Sbjct: 311 DRYPTVDPLAIQWSSEGSFIWRV-----KGDKSERVPIKIIQRNPDKVLVDAELAEGDRV 365

Query: 335 VVSGQLKLSDGMPVEPVAQDSLQASQ 360
           V  G  +L DG  V    + + +A Q
Sbjct: 366 VTEGVQRLRDGGVVRIAGEPAAEAEQ 391