Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  214 bits (544), Expect = 4e-60
 Identities = 127/317 (40%), Positives = 182/317 (57%), Gaps = 5/317 (1%)

Query: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96
           P   V +A A+   L     A G+L AV+QV V +++ GRIT I F++G  V  G LLV+
Sbjct: 64  PPITVTVAEAKTEVLPNLLTAVGDLAAVHQVNVTSDVSGRITDILFQAGSEVKQGTLLVK 123

Query: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156
           L D  EQA     +A+ + A++ L R+++L A     Q  +D+A  A D A   +   EA
Sbjct: 124 LFDETEQADLANYRAQAKVAELSLDRAKQLAARQFGPQATVDSAQAAYDQANAGIAKTEA 183

Query: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216
           LI+QK +RAPF G LG+R V  GQYL+AG  IV+L D+SQ++ N  + E+ +  +  GQ 
Sbjct: 184 LISQKKVRAPFDGVLGVRHVEVGQYLSAGTQIVTLTDLSQVYANITVTEKDSGTLAVGQA 243

Query: 217 LALTVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275
           + L VDA  G+ F  ++  ++P +S+  R ++VQA L NP   L+PGM+A   +      
Sbjct: 244 VRLKVDAYPGRVFDGKITTIEPQISSDTRNIRVQATLDNPGHVLRPGMFATTIVVLPDKP 303

Query: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRVS----RVQVTTGERWQGRVEITSGLTPG 331
            V+ VPETA+ YT YG +VF+  ++     +      R  V TG+R  GR  I +GL  G
Sbjct: 304 AVVTVPETAVDYTLYGDSVFLIKEEKGEDGKAKLSAVRTFVRTGDRIDGRTVIQTGLKAG 363

Query: 332 DRVVVSGQLKLSDGMPV 348
           DRVV  GQLKL  G  V
Sbjct: 364 DRVVAVGQLKLQSGAAV 380