Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  109 bits (273), Expect = 1e-28
 Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 25/343 (7%)

Query: 12  AVAGALAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAA 71
           A++ A+ +  A   S S  P   V P  +VAL             A G +EA++Q  VAA
Sbjct: 30  ALSLAVGSVVAAEASPSELPTRVVQPR-EVALTLP----------AEGVVEALSQAVVAA 78

Query: 72  EMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNA 131
           ++ GR+T +  ++GQ V  G+++++L+           QA L NA    +RSR LR  N 
Sbjct: 79  QVAGRVTEMRVDAGQAVKKGEVMLRLDVREAAETAAGAQAALVNARAQYERSRSLRQQNF 138

Query: 132 VSQELLDNAATAVDVARGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSL 191
           +SQ  LD A   +D+A        A  +   I AP +G +  R +  G+  A G ++V+L
Sbjct: 139 ISQSALDKAKADLDLAMANAGASGASQSHGTITAPISGLVARRHIELGEMAAQGRSLVTL 198

Query: 192 ADISQLHVNFALGEQAAPEVHAGQVLALTVD--AVRGQDFQARVVAVDPVVSTARLVQVQ 249
            D + L V   + +    E+  G+ L   ++   ++ Q   A+V  +    +    VQV+
Sbjct: 199 YDPAGLRVTVEIPQYRLKELKGGKDLQGRIEFPELQRQVAAAKVTVLPAADAATHTVQVR 258

Query: 250 AALPNPQGQLQ---PGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTR 306
             LP     LQ   PGM A V     + +  L VP +A+     G+   +  +D Q   R
Sbjct: 259 LNLPGDAASLQDVLPGMAARVHFVLGR-AVKLTVPASAV--VRRGEVAGLYVRDGQ--GR 313

Query: 307 VSRVQVTTGER-WQGRVEITSGLTPGDRVV---VSGQLKLSDG 345
           +S  Q+  G+    G VE+ +GL+ G+ +V   V G + L  G
Sbjct: 314 LSLRQLRLGQAVGDGEVEVLAGLSAGETIVLDPVRGGIALKQG 356