Pairwise Alignments

Query, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 320 a.a., RND transporter from Burkholderia phytofirmans PsJN

 Score =  117 bits (294), Expect = 3e-31
 Identities = 95/313 (30%), Positives = 144/313 (46%), Gaps = 16/313 (5%)

Query: 50  QLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQL 109
           ++  Q   SG +     V + A + G +  I F  G  V  GQLL ++     +A     
Sbjct: 7   EVREQLDLSGTVAPSATVTLVARVQGVLKEIGFSDGANVKQGQLLFRIEPDTYRAQLTYD 66

Query: 110 QARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEALIAQKAIRAPFAG 169
           QA L NA+  L R ++L A NA S+  L  A T  D A  +       +    IRAPF+G
Sbjct: 67  QAELVNAEQELTRQKQLTADNATSESSLQKAQTTRDQALAKRDMSRINLGYTEIRAPFSG 126

Query: 170 KLGIRRVHQGQYLAAGET--IVSLADISQLHVNFALGEQAAPEV-------HAGQVLALT 220
           ++G R    G  + A ++  + +L  I  ++VNF L E+ A  +          +V  L 
Sbjct: 127 RIGARSFDVGNLVGASDSTKLATLDRIQPVYVNFTLNERDANRIGLFTKPPRTVRVNVLG 186

Query: 221 VDAVRGQDFQARVVAVDP-VVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLA 279
             A +G+D  A +  VD  V S++  ++++A + N    L PGM   V + A  P  VL 
Sbjct: 187 APAGKGED--AALEFVDTRVDSSSGAIRLRADIANKDAHLIPGMSVEVHIPAGAPQNVLL 244

Query: 280 VPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQ 339
           VP+TA+     G  V V        + + +  V TG  +     ITSGL  GD+VV  G 
Sbjct: 245 VPDTALLREQAGAFVLVVNS----ASVIEKRAVVTGGLFGSLRAITSGLNAGDQVVTGGA 300

Query: 340 LKLSDGMPVEPVA 352
           L ++ G  V+  A
Sbjct: 301 LAVAPGTKVQVAA 313