Pairwise Alignments
Query, 1214 a.a., Exonuclease SbcC from Pseudomonas putida KT2440
Subject, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056
Score = 154 bits (390), Expect = 3e-41
Identities = 221/862 (25%), Positives = 370/862 (42%), Gaps = 174/862 (20%)
Query: 491 FREAKAEPQALAEQIDLLGGMLQDNRKQQ--RAV-EEMSRLHGREQELRQQLDALR---- 543
FRE EQI G + Q Q RA+ E + + ++E QQ+
Sbjct: 161 FRELLTANSKEREQI--FGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVG 218
Query: 544 -ERQQQAMLQRQQLITEGTAAKAELEAAEQ-----------ALTLTRQLLERQRLA---- 587
E ++Q + +L T A+++L+A +Q AL L +Q + +Q+L
Sbjct: 219 LESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIA 278
Query: 588 ----RNTSVEELRNQLRDGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEE------HAAQ 637
+ T +E LR Q + + + +HQ + LQ + ++ A Q
Sbjct: 279 THQEQATHIEMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQ 338
Query: 638 KQVETLNSKLVELRTQLGVVNAQLKDFQQQQQRL--GEQLQPLVAQVQAHSLWPALAPQD 695
+Q + + + ++ +N Q +Q+ +Q+L E +Q VA+ + LA Q+
Sbjct: 339 QQAQQASQQASLACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAEREL---QLATQN 395
Query: 696 DKARSAWLDSQLRRLDEEISQD----EKRQSALLALQRDAARLNQ---QLQAAHDAQ--- 745
+ L +L++E+ E++Q L L+ AR+NQ Q+QA Q
Sbjct: 396 ----ALNLQQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQSLL 451
Query: 746 ------QQAQRHLEQQHQALANDEQLLQQGLNDLAGV-----LPEEALKALNDDPANAFL 794
QQA EQQH + + + + L E AL ++P
Sbjct: 452 NELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCG 511
Query: 795 ALDQQIAQRLQQLEQRKDELEEQQARQTQLDKLRDQQQARVQGQQQ------LQQKLAAL 848
+L+ + Q +++ +QARQ Q D ++ QQ+A QQQ + Q L L
Sbjct: 512 SLEHP--NKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNLTTL 569
Query: 849 D-EQRQQALASLAELLGEHASAEAWQQHMDTALEHARTLDADTAQR-LQDLRTQGVQLAS 906
E Q +A L EL+ + QQ + + + + L+ D +R +++ +
Sbjct: 570 SSELTLQQVALLNELIEQ-------QQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKM 622
Query: 907 ELKANTQQQQALDAECQQLQAQIAQWRSE-HPELDDAGLDRLLAMDDAQVNELRQRLQGA 965
L+ Q QQ QLQA++A R E PEL D LD L + N++ + LQ A
Sbjct: 623 TLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSD--LDTLRSAIGRVQNQI-EILQKA 679
Query: 966 EKAIEQGRVLLQEREQRLQ---------HHAAQMTVDTTVQALEQ--------------- 1001
E + V Q++ +Q H +Q + T A +Q
Sbjct: 680 EHTAREQWVQAQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLA 739
Query: 1002 ------ALAELRERLANHEQQCAELRAQQADDQRR-----QQAHQALAAEIEQAHQQW-- 1048
A+ + ++A +E++ A L +Q R+ + + L ++ QA ++
Sbjct: 740 ARLTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMAL 799
Query: 1049 ------QRWARLNAL--IGSASGDVFRK----------------IAQGYN---------- 1074
Q +R++ L + D+++K IA G
Sbjct: 800 ALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFV 859
Query: 1075 ----LDLLLHHANAQLRQLAR-RYRLKRG--------GSALGLLVLDTEMGDELRSVHSL 1121
LD +L A+ +L +++R RY LKR GS L L+V D+ G + R V +L
Sbjct: 860 LGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSG-KWRDVATL 918
Query: 1122 SGGETFLVSLALALGLASMA---SSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQG 1178
SGGE+F+ +L+LALGL+ + S +R+++LFIDEGFGSLDPESL LA+ L LQ G
Sbjct: 919 SGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGG 978
Query: 1179 RKVAVISHVQEMHERIPVQIQV 1200
R + +ISHV E+ E+I +++ V
Sbjct: 979 RTIGIISHVTELKEQIGLRLDV 1000
Score = 153 bits (387), Expect = 6e-41
Identities = 234/953 (24%), Positives = 382/953 (40%), Gaps = 203/953 (21%)
Query: 1 MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPR 60
M+ L + L+ AG +IDFT L A LF I G TGAGKS++LDA+C AL+G
Sbjct: 1 MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
Query: 61 LNAIGREAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDF-VGIDGRRYRARWEANRARDK 119
G + + D P S EV F + G RY+ + ++ K
Sbjct: 59 SERTGDQMR---CDYAAPES-------------LTEVIFEFELAGARYQITRQPDQEIPK 102
Query: 120 ANGKLQHSRQSFYDL-----DSEQVLGSGKNEYKQLVEARLGLNFEQFTRAVMLAQSEFG 174
G+ + L D +++ + N + V +GL+ +QF + ++L Q +F
Sbjct: 103 KRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFR 162
Query: 175 AFLKADDKDRSELLEKLTNTAIYTRLGQRAFSKAREAGEAHNALKERASHLLPMAAEARA 234
L A+ K+R ++ +L T +Y+++ + F +A A
Sbjct: 163 ELLTANSKEREQIFGQLFQTQLYSQIERALFERA-------------------------A 197
Query: 235 ELDQRLEQAQQQFKADQAGERQLEQQRNWLNEQRQLQAQHTEASTTLQAAELDWQQLAEP 294
+ + E+ QQ K LE + E +L T A + L+A + W +
Sbjct: 198 GIRKEKEEFDQQIKG-TLSVVGLESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETK-- 254
Query: 295 RLDLARLERLAPQRHQFHRRQALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALDTARQ 354
A + QF R+Q L +IA Q+Q +++ ++ +QA AR
Sbjct: 255 ----AHYQAALELEQQFIRKQQL-------VVEIATHQEQATHIEMLRQQRQQAQKAARL 303
Query: 355 ALADRQAEHGENAPRLRQAFAAQDTLARLDQELAAQRSISQQAQQQVADGQQQLQQLEDN 414
+Q + L+QA + L Q+ AQ+ +QQA QQ + +++ +L N
Sbjct: 304 TAVHQQWHQAQK--NLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKL--N 359
Query: 415 QQRSVQQLALIDTALADSQHLAGLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQAS 474
+QR Q A Q L N A +++ L + LQ
Sbjct: 360 EQRITWQRA--------EQKLLAQENVQQAVAKAERELQL-------ATQNALNLQ---- 400
Query: 475 QANARLQAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQE 534
QA+ +L+ E L + + + + L Q + ++Q + ++R ++ L +Q
Sbjct: 401 QASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQA 460
Query: 535 LRQQLDALRERQQQAMLQRQQLITEGTAAKAEL-----EAAEQALTLTRQLLERQRLARN 589
L LR QQ +Q Q + TA K E AAE AL LT+
Sbjct: 461 L------LRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQ----------- 503
Query: 590 TSVEELRNQLRDGEPCPVCGSAEHP--------------FHQPEALLQSLGRHDQAEEHA 635
EPCPVCGS EHP Q Q + Q HA
Sbjct: 504 ------------NEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHA 551
Query: 636 AQKQ---VETLNSKLVELRTQLGVVN-AQLKDFQQQQQRLG------EQLQP--LVAQVQ 683
Q+Q E + L L ++L + A L + +QQQ L +QL P L Q++
Sbjct: 552 WQQQGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQLNPDLLKRQIE 611
Query: 684 ------AHSLWPALAPQDDKARSAW-----LDSQLRRLDEEI------------------ 714
AH+ L Q+ + AW L ++L L +EI
Sbjct: 612 EGEQRLAHTKM-TLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLDTLRSAIGRVQ 670
Query: 715 SQDEKRQSA-------LLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQLLQ 767
+Q E Q A + Q+ A + QAA +A +++QR +Q+ A + LL
Sbjct: 671 NQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEAHRESQR--QQEETTSAWQQGLLH 728
Query: 768 QGLND----LAGVLPEEALKALNDDPA-----NAFLALDQQIAQRLQQLEQRKDELEEQQ 818
G +D LA L +EA+ + A +A L+ +QQ R + E+ + ELE
Sbjct: 729 SGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSGEQQALSR-KLAEKNRPELEPLL 787
Query: 819 ARQTQLDKLR-------DQQQARVQGQQQLQQKLAALDEQRQQALASLAELLG 864
+ TQ ++ Q Q+R+ G Q++ ++LA L Q+ +AL + +++G
Sbjct: 788 VKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADL-YQKNRALEAEYQVVG 839