Pairwise Alignments

Query, 319 a.a., adhesin-associated BNR repeat protein (from data) from Pseudomonas putida KT2440

Subject, 336 a.a., BNR repeat protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  174 bits (442), Expect = 2e-48
 Identities = 110/319 (34%), Positives = 160/319 (50%), Gaps = 35/319 (10%)

Query: 8   AAAADQYSTESAKASQSLLIDATHAGKRLVVVGDRGHILFSDDQGSTWTQARVPTRQLLT 67
           +A ++ +      A+ SL++D  HAG+ LV VG+RGH+L   D+   W Q   PT   LT
Sbjct: 24  SAQSEHFPQIQPLAASSLVLDIAHAGQHLVAVGERGHVLVLTDK---WQQVPTPTSVQLT 80

Query: 68  AVFFLDDKRGWAVGHDAQILASTDGGATWSKQFEDLAREAPLLDVTFLDAQHGFAVGAYG 127
            VFFL++K GWAVGHDA IL + DGG TWS Q +    E P LDV FL+ Q G A+GAYG
Sbjct: 81  KVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPFLDVLFLNEQEGMAIGAYG 140

Query: 128 ALLETTDGGQHW-----------QDVA--ERLDNPDQL-----------HLNGIAQVRDA 163
               T DGG +W           +DV+    L N DQ            H N +  ++D 
Sbjct: 141 LFYRTRDGGANWTEEFHEELLAEEDVSYLAELKNSDQAAYLTERASLLPHFNRMIALKDG 200

Query: 164 GLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQTLLAYGLRGNLFRSSDFG 223
            L +VGE G +  S D GQ++ +    Y+GS+F  I       +   GLRG++F++    
Sbjct: 201 RLLLVGELGLVAMSADKGQSFTRTGFDYDGSMFNAI--QLQDAVYVMGLRGHVFKADLSL 258

Query: 224 DNWQPIELKAARGTLEFGLAGATLVDDGTLVLVGNGGSVLRSTDDGQTFSVYNRADRLAL 283
             W  I++      ++  + G     + +L LVGN G V++   D  + S+  R     L
Sbjct: 259 AQWDEIDM-----PVKSSINGVMATSETSLYLVGNAGIVIQLNQDDSS-SIVTRRQGENL 312

Query: 284 AGVSGLANGGLLLVGQGGV 302
             ++    G + L G  G+
Sbjct: 313 VSIAKDNQGNVWLSGSQGL 331



 Score = 26.9 bits (58), Expect = 7e-04
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 1   MWADSAQAAAADQYSTESAKASQSLLIDATHAGKRLVVVGDRGHILFSDDQGSTWTQARV 60
           M AD  Q+     +  + +  +   L DA +      V+G RGH+  +D   + W +  +
Sbjct: 213 MSADKGQSFTRTGFDYDGSMFNAIQLQDAVY------VMGLRGHVFKADLSLAQWDEIDM 266

Query: 61  PTRQLLTAVFFLDDKRGWAVGH 82
           P +  +  V    +   + VG+
Sbjct: 267 PVKSSINGVMATSETSLYLVGN 288