Pairwise Alignments

Query, 295 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 528 a.a., rhomboid family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 138 LAQSLDEGQWWRLVSPMLLHFGVLHLAMNSLWYWELGKRIELRQGPWALLGLTLLFSLVS 197
           L Q + + Q WRL+S + LH G++HL  N    +  G  +E   G W LLG+ L+  L +
Sbjct: 373 LRQLVLDQQVWRLISNVFLHGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAA 432

Query: 198 NLAQHYTSGPSLFGGLSGVLYGLLGHIWLYQWLAPDRYFNLPKGVLVMMLIWLVVCLTGV 257
           ++A       ++  G SG + GL G + ++ W+      +LP    +++ + L + ++  
Sbjct: 433 SIASISWYEATISIGASGAIMGLFGVLIMWIWMG-----SLPLATHMLLALHLTLFVSAS 487

Query: 258 VGTLGLGQIANAAHVGGLLIGCLTGLLGGALARRKLS 294
           +    LG + NAAH+GGL  G L G +   +A  +++
Sbjct: 488 LVMGLLGGVDNAAHLGGLGSGLLLGCVLRPIALNQMN 524