Pairwise Alignments

Query, 346 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 355 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  102 bits (254), Expect = 1e-26
 Identities = 97/338 (28%), Positives = 145/338 (42%), Gaps = 25/338 (7%)

Query: 8   LGELSVGFVQPLSEALRELGHDPEPLLRRYGLDATRLSEAGARLSIPRYMHMG-----HA 62
           + E  +GFV P            E LL + GLD   L +   R+ +  Y  +      H 
Sbjct: 28  VAEALLGFVGPRLSG--------EHLLEKIGLDPACLQDPDGRMDVRDYSQLWLRLARHF 79

Query: 63  AIEMSGEAALGLRMGRLSRLAHTGLAGVTAAQAPTLGEAARTLLRFEPLYAANYRGHSRF 122
             E  G     LR G    L+ + L      Q PTL +A    L F  L   N RG    
Sbjct: 80  DDEFFGMDPRRLRSGSFVFLSRSCL------QQPTLEKALVHALEFLGLGLENLRGKLIR 133

Query: 123 EEDAQGAWLRFYSISPYNDYNRFVVDSLLAGWLAQLAELAGTPVQAERLEIEFAAPSYAA 182
            +      LR  +  P   +  F    LL G    L    G  +    +E+  A P Y  
Sbjct: 134 SQSLAEVVLRERNAEPARAFCYFTFWMLLHGLACWLV---GRRIPLLAVELRCAEPDYTD 190

Query: 183 RYQPLCSTPVQFAADGNQLRLSRATLQLANPGHCPSTWQHLLQLCEAELLQRTRVRS-LG 241
            Y+ + S  ++F     ++  +   L L       +  +  L    A +L R R  S L 
Sbjct: 191 DYRVMFSDNLRFGRPSTRIIFAAEVLDLPIR-RSEAELRAFLAEAPANILVRYRDHSSLA 249

Query: 242 ERITHLLGPLLNGGREPDLEEVALHLQLPSWTLRRKLAEEGTRFRDLLNETRRDLAETYI 301
            RI   L  L    R PD E +A  L + + TLRR+LAE G  ++ + +  R+++A  ++
Sbjct: 250 SRIKQHLRSL-PAERWPDSETLAQTLCISASTLRRRLAEAGQPYQAIKDGLRQEMATEWL 308

Query: 302 RDTALAFGEIAYLLGFASAEAFQRAFKRWTGLTPGEFR 339
            D A+++GEIA  LGFA   +F +AF++WTG+ PG +R
Sbjct: 309 ADAAISYGEIAERLGFADVSSFYKAFRKWTGINPGHYR 346