Pairwise Alignments

Query, 346 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 349 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  134 bits (337), Expect = 3e-36
 Identities = 107/340 (31%), Positives = 158/340 (46%), Gaps = 20/340 (5%)

Query: 12  SVGFVQPLSEALRELGHDPEPLLRRYGLDATRLSEAGARLSIPRYMHMGHAAIEMSGEAA 71
           S  + Q + ++L   G D   L    GLD + L++  AR +      +   A+ +SG  A
Sbjct: 19  SSSWAQGIVQSLESAGVDCRQLFGELGLDYSALNDPDARFAQDDMTRLWQRAVAVSGNPA 78

Query: 72  LGLRMGRLSRLAHTGLAGVTAAQAPTLGEAARTLLRFEPLYAANYRGHSRFEEDAQGAWL 131
           +GL M R  R A   + G     +  L E    L+R++ + A        F+  A+G  L
Sbjct: 79  IGLDMARQVRPAALNVVGYALMSSCNLKEGFARLVRYQRIIAEG--ADLDFQPCAEGYRL 136

Query: 132 RFYSISPYNDYNRFVVDSLLAGWLAQLAELAGTPVQAERLEIEFAAPSYAARYQPLCSTP 191
               +       R   +  LAG L     L+GT ++   +  +   P     Y+ L   P
Sbjct: 137 SLTILGDRLPPARQSAEGSLAGCLTFCRWLSGTMLRPLEVSFQGPPPDDLEPYRQLFQAP 196

Query: 192 VQFAADGNQLRLSRATLQLANPG--------HCPSTWQHLLQLCEAELLQRTRVRSLGER 243
           ++F A    L   +A +++  P         H     ++L +  +  +L RTR       
Sbjct: 197 LRFEAQRYALLFRQADVEMPLPTANEALAQLHDRFAGEYLSRFADTRVLHRTR------- 249

Query: 244 ITHLLGPLLNGGREPDLEEVALHLQLPSWTLRRKLAEEGTRFRDLLNETRRDLAETYIRD 303
              +L  LL  G EP  E VA  L L   TL+R+L EEG+ F+ LL++TRRDLA  ++  
Sbjct: 250 --QILCRLLPQG-EPRREIVAQALCLSERTLQRRLQEEGSTFQQLLDDTRRDLAVQHLAQ 306

Query: 304 TALAFGEIAYLLGFASAEAFQRAFKRWTGLTPGEFRRSQR 343
             LA  EIAYLLGFA    F RAFKRW G+TPGE+R + R
Sbjct: 307 PDLAPLEIAYLLGFADPSNFYRAFKRWFGMTPGEYRLAAR 346