Pairwise Alignments

Query, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

Subject, 294 a.a., tRNA pseudouridine synthase A from Synechococcus elongatus PCC 7942

 Score =  156 bits (395), Expect = 4e-43
 Identities = 94/261 (36%), Positives = 140/261 (53%), Gaps = 6/261 (2%)

Query: 9   ATAESAAEG--YSRIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCA 66
           A AE  A+     RIAL ++Y G  + GWQRQ     SVQ  LE A++ V   P+SV  A
Sbjct: 2   AIAEEPAQAPVIQRIALVIQYLGQGFCGWQRQPRQ-RSVQGELESAIAAVVGHPVSVQSA 60

Query: 67  GRTDAGVHGCGQVVHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACAR 126
           GRTD GVH   QV HF+T +      W    N  L  D+++  +  +PA++HARF A  R
Sbjct: 61  GRTDTGVHAAAQVAHFETTSPIPAHRWPSVLNGRLTPDLNIRAAAIVPANWHARFSASYR 120

Query: 127 RYRYVIYNDPIRPAHLAEEVTWNH--RPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSP 184
           RYRY IY DP  P        W++   PL  ++M  A Q L+G H  +AF+ S  + +  
Sbjct: 121 RYRYTIYTDPC-PNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHA 179

Query: 185 IKHIYHLRVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRR 244
             H+    V R   +I ++V+A+ FL+ M+R + G+L+ +G G R +    ++   + R 
Sbjct: 180 WVHVQDAWVRRRDSLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRD 239

Query: 245 EGGVTAHPYGLYLVQVEYPEA 265
                A P GL L+++ YP++
Sbjct: 240 RVRHAAPPQGLCLLRIGYPDS 260