Pairwise Alignments

Query, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella amazonensis SB2B

 Score =  306 bits (785), Expect = 2e-88
 Identities = 149/259 (57%), Positives = 190/259 (73%), Gaps = 1/259 (0%)

Query: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79
           RIALG+EY G+++ GWQRQA  V SVQ  LE+ALS VANEPI V CAGRTDAGVH  GQV
Sbjct: 2   RIALGIEYDGSKFYGWQRQAE-VNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV 60

Query: 80  VHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRP 139
           VHFDT AVR E AWT+G N +LP DI+V W+ P+  DFHARF A ARRYRYVI+N   RP
Sbjct: 61  VHFDTNAVRKEGAWTLGVNVHLPDDIAVRWAMPVNDDFHARFSATARRYRYVIFNHNFRP 120

Query: 140 AHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHGQM 199
             L + V+  H  +DV+RM +AAQ L+G  DF++FRA  CQ+ +P ++++ + V+RHG  
Sbjct: 121 GILRKGVSHYHGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKVSVSRHGMY 180

Query: 200 IVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQ 259
           IV+D++A AFLHHMVRNI G L+ IG G +P+ W   +LE ++R +   TA P+GLYLV 
Sbjct: 181 IVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAATAKPHGLYLVD 240

Query: 260 VEYPEAFALPKRYIGPHFL 278
           V YPE+F LPK  +GP F+
Sbjct: 241 VTYPESFGLPKLSLGPLFM 259