Pairwise Alignments

Query, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score =  300 bits (769), Expect = 2e-86
 Identities = 147/259 (56%), Positives = 187/259 (72%), Gaps = 1/259 (0%)

Query: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79
           R+ALG+EY G+RY GWQRQA  V SVQ  LE+ALS VANEPIS+ CAGRTDAGVH  GQV
Sbjct: 2   RVALGIEYDGSRYFGWQRQAE-VDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60

Query: 80  VHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRP 139
           VHF+T AVR E AWT+G N NLP DI+V W++ +  +FHARF A ARRYRY+IYN   RP
Sbjct: 61  VHFETNAVRKESAWTLGVNVNLPDDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQFRP 120

Query: 140 AHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHGQM 199
             L   V+     +D  +M EAAQ+LLG  DF++FRA QCQ+ +P + ++ + VTR G  
Sbjct: 121 GILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQGMY 180

Query: 200 IVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQ 259
           I +D++A AFLHHMVRNI G L+ +G G +PV+W +E+L  ++R +   TA P GLYLV 
Sbjct: 181 ICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYLVD 240

Query: 260 VEYPEAFALPKRYIGPHFL 278
           V YPE +ALPK  +GP F+
Sbjct: 241 VTYPEHYALPKLALGPLFM 259