Pairwise Alignments

Query, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  302 bits (774), Expect = 4e-87
 Identities = 147/259 (56%), Positives = 187/259 (72%), Gaps = 1/259 (0%)

Query: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79
           RIALG+EY G+ Y GWQRQA  V SVQ  LEQALSKVANEPIS+ CAGRTDAGVH  GQV
Sbjct: 2   RIALGIEYDGSGYFGWQRQAE-VDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60

Query: 80  VHFDTRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRP 139
           VHF+T A+R+E AWT+G N NLP +I+V W++ +   FHARF A ARRYRYVIYN   RP
Sbjct: 61  VHFETNAIRNEGAWTLGVNANLPDNIAVRWAKEVDDTFHARFSATARRYRYVIYNHNFRP 120

Query: 140 AHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHGQM 199
             L   V+  H  +D D+M  AAQ LLG  DF++FRA QCQ+K+P ++++ ++VTR G  
Sbjct: 121 GILRHGVSHYHGDIDTDKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQGMY 180

Query: 200 IVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYLVQ 259
           +++D+ A AFLHHMVRNI G L+ IG G +P+ W  ++L  ++R +   TA P GLYLV 
Sbjct: 181 VIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYLVD 240

Query: 260 VEYPEAFALPKRYIGPHFL 278
           V YPE + LPK  +GP F+
Sbjct: 241 VTYPEQYQLPKLALGPLFM 259