Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1238 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  360 bits (925), Expect = e-103
 Identities = 247/711 (34%), Positives = 381/711 (53%), Gaps = 39/711 (5%)

Query: 396  DITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLG 455
            DI+D+V   Q L    E+F  + + + D +      T + I  +  +++ FG    ++  
Sbjct: 534  DISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNE-IWYSANYSRLFGGEEKEITQ 592

Query: 456  RTAEEIGL-WAESVERAKRIEQVIRE------QALSNVAVVLNHRNGDPLTCVISSRLIT 508
            +  + + L W + ++  +R E+++           S  +        D     +  R   
Sbjct: 593  KLVQTVDLQWRDRLDPDQR-ERIMASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYI 651

Query: 509  VDDQPCSVTTLRDITQQQRAEAALKSSEEK--FAKAFHSSPDAITITERHSGRY--LEVN 564
            V D+  +   +R +   Q   A + ++E+   + +A  S+ ++I I +        + VN
Sbjct: 652  VRDE--NGRAIRAVGAMQDISAIVAANEQLRLWLRAIESTGNSIIIADAQQPDMPIIYVN 709

Query: 565  DGFCRLTGYSTDEVIGHTVYEI-GIWADDKQRSALLAELR---ERGRVHHREMLGRNKRG 620
              F ++TG+S  EVIG     + G+    + + A L E+R   E G      +    K G
Sbjct: 710  PAFEKITGFSAAEVIGRNFRFLQGL----ETQQAELEEMRRALEEGTYCEVTLRSYRKDG 765

Query: 621  DILTVEVSVEPIT--LNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDR 678
             +   ++S+ P+      +  ++ +  DVS+ K  +  +   A HD LT LPNR L +DR
Sbjct: 766  SLFWNQISLAPVRDQKGHLTHMVASQTDVSESKAFEEMLLQQATHDALTGLPNRLLFLDR 825

Query: 679  LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVAR 738
            L Q  A  +      A+LF+DLD+FK IND   H  GD VL+I   RL+  ++  +TVAR
Sbjct: 826  LDQAAARARGGGSPIAVLFIDLDNFKAINDGFSHSEGDAVLQIAAGRLQQCIQEHETVAR 885

Query: 739  LGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDH 798
            L  DEFV+LL  L+     V+ K R  A  ++ L+A+P  + G  +++T SIGVA  P  
Sbjct: 886  LSSDEFVILLIDLD-----VQSKARVKAAMIQSLMAKPFEVMGNPIELTASIGVATFPHD 940

Query: 799  GTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHF 858
            G + ++LL+ AD+A+  AK  G+N    F   M++    R+ +E DLR AL    L L+F
Sbjct: 941  GQSGSELLQAADLAVCAAKQQGKNLWCSFSEAMREQLRSRIDIEKDLRQALIDNSLELYF 1000

Query: 859  QPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACAR 918
            QPQVD   +R++G E L+RW+HP+ G   P +FI + EES LI  +G W++  A     R
Sbjct: 1001 QPQVDLVTHRLLGFETLVRWNHPERGLVAPGEFIPIAEESDLIDAIGLWVMRAAGLTLRR 1060

Query: 919  MLTDGLIDADDF--NLCVNISPRQF-RQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQ 975
                  ID + F  +L  NIS RQF RQN F+ ++   L ++++P   L +E+TE  +I+
Sbjct: 1061 W-----IDHEGFTGSLSFNISARQFIRQNIFL-KLFDVLQEFQIPPHQLEIELTESSLIE 1114

Query: 976  NLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAE 1035
            + E  +  + E +  G   A+DDFGTGYSSL YLKRLP++ALKID+SF+RD P D +D  
Sbjct: 1115 SPERFVQWLQEARSMGFQVALDDFGTGYSSLGYLKRLPINALKIDRSFIRDLPHDHDDQA 1174

Query: 1036 IVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPE 1086
            IV+AIVAMA+ L L  IAEGVE  EQ AFLE +GC   QG+ +  PLP  E
Sbjct: 1175 IVQAIVAMAKVLKLRTIAEGVERLEQAAFLEAIGCDAVQGFFYGPPLPEAE 1225



 Score = 57.4 bits (137), Expect = 7e-12
 Identities = 105/484 (21%), Positives = 192/484 (39%), Gaps = 65/484 (13%)

Query: 80  LLPEEDRARTRQVFQAVVNGEPV--EQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMI 137
           ++PE  +         + +G P+  E+   +   WP  S H+L     L ++      ++
Sbjct: 355 VMPEVIKQEDINDLATIASGLPIINEEWTINPENWP--SQHFLISKVPLRNELGQILGLL 412

Query: 138 GVIREITRQRERETAL-INSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPG 196
           G+ R +TR R  E A    S++   TL  +S   ++L +  + ++  +N           
Sbjct: 413 GIRRNVTRWRRAEQARNALSDQLEQTLAAVSDGVVVLDQ--NFVVRALNSQAAQQLKKTS 470

Query: 197 SQVIGKT-----SLELGLWVNPE-QRHQIVESTRANGGPLIMEVQFRATSGKVHDGILCT 250
            Q+IG+       +ELG  +  E Q  Q   STR        E+          D +   
Sbjct: 471 EQIIGRVFWDLFPVELGATLQSELQPLQHQSSTRT------FELWI--------DPLSTC 516

Query: 251 QGIELEGVTFLIST-FVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309
             + +   T  IS  F D ++R  + Q L++  ER  L   +     WD ++ +  ++ S
Sbjct: 517 WEVNVHRSTAEISLYFRDISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNEIWYS 576

Query: 310 ARAAQLHG------------LPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNY 357
           A  ++L G               + + +  D      P+     M     ++  G    +
Sbjct: 577 ANYSRLFGGEEKEITQKLVQTVDLQWRDRLD------PDQRERIMASLSGAIANG-FSTW 629

Query: 358 QITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQR----LSASEEK 413
              YR   ++GT  ++  R  + RD+ G  +R  G + DI+  V   ++    L A E  
Sbjct: 630 SEQYRFLRQDGTYAHVLDRGYIVRDENGRAIRAVGAMQDISAIVAANEQLRLWLRAIEST 689

Query: 414 FASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEI-GLWAESVERAK 472
             S+       I   +Q     I +NPAF +  G+S+A+V+GR    + GL  +  E  +
Sbjct: 690 GNSII------IADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGLETQQAE-LE 742

Query: 473 RIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPCSVTTL----RDITQQQRA 528
            + + + E     V +    ++G      IS  L  V DQ   +T +     D+++ +  
Sbjct: 743 EMRRALEEGTYCEVTLRSYRKDGSLFWNQIS--LAPVRDQKGHLTHMVASQTDVSESKAF 800

Query: 529 EAAL 532
           E  L
Sbjct: 801 EEML 804