Pairwise Alignments
Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440
Subject, 929 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942
Score = 375 bits (962), Expect = e-107
Identities = 241/710 (33%), Positives = 378/710 (53%), Gaps = 43/710 (6%)
Query: 395 LDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVL 454
+DIT++ + E+ F L + DP+ V D + NPA + + Q+
Sbjct: 251 IDITEKQAARELAHQREQAFRKLLNDNRDPLLVISGDR-RICYANPAAQKLLKLNLEQLE 309
Query: 455 GRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPC 514
++ + L + E A + +VA V HR+ + QP
Sbjct: 310 SQSLDLPLLSDKLTEWALTLPD-------GSVAEVEIHRSETDW-----------EGQPA 351
Query: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 574
+ +LRDI +++ +E L+ +E +F+ I Y VN F R+TGYS
Sbjct: 352 DLLSLRDIAERKASEQQLRLLKESLEASFNGVVIVDAIEPDMPVIY--VNPAFERITGYS 409
Query: 575 TDEVIGHTVYEIGIWADDKQRSALLAELRERG--RVHHREMLGRN--KRGDILTVEVSVE 630
E++G + +R +L E RG + + ++ RN K G ++ +
Sbjct: 410 EAEMLGRNCRIL----QGNERDSLQIEEIHRGLSQAENVHVVIRNFRKDGQPFWNDLYIS 465
Query: 631 PI--TLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQ--QIALL 686
PI V + D+++ K + ++ A HD LT LPNRA+L DRL Q ++AL
Sbjct: 466 PIFNAQGNVTHFIGVQNDITEQKRYEEELSFSASHDVLTGLPNRAVLEDRLRQGCKMALR 525
Query: 687 KRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVV 746
++H+L A+LF+DLD FK INDS+GH GD +L + R+ VR DTVAR+GGDEF++
Sbjct: 526 QKHSL--AILFIDLDGFKLINDSIGHRSGDLLLVEVAQRMCEQVRAGDTVARIGGDEFII 583
Query: 747 LLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLL 806
LL L+ +E V +AD L +A P + G L VT S+G+ L P L+
Sbjct: 584 LLVDLK-----LENDVISIADRLLASVARPYHIQGIYLHVTASMGITLSDGDIEQPTQLI 638
Query: 807 KRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARD 866
++AD+A+Y+AK GRN Q + + ER+ + N+L+ A+ L+FQP+++
Sbjct: 639 QQADLAMYKAKQEGRNNYQWYTNDLNLRLRERVHLRNELQKAIETEAFELYFQPKIEGCS 698
Query: 867 NRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLID 926
+++G E LLRW HPQ+G P+ F+ + E++G I+ + W+L+ AC +L G+
Sbjct: 699 GQVIGLEALLRWQHPQMGFISPATFVPIAEDTGQIIPLSQWVLETACRQLRDLLQQGIAA 758
Query: 927 ADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCE 986
++ VNIS QFR+ +FV V +L Y+L + L +EITE ++ N E I K+
Sbjct: 759 P---SVAVNISTVQFRRINFVKSVQSALQKYQLKSEHLEIEITENVLFDNTEKAIEKLQR 815
Query: 987 LKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARS 1046
LK GV+ ++DDFGTG+SSL+YLK LP+D +KID+SFV++ D DA I + I++MA
Sbjct: 816 LKELGVNISIDDFGTGFSSLSYLKELPIDTVKIDRSFVQEINTDSRDAAITQGIISMAHH 875
Query: 1047 LDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQMLLEAPA 1096
L L V+AEGVE +Q FL++ C YQGY ++P+P +Q L++ A
Sbjct: 876 LRLNVVAEGVETEQQFKFLQQSNCDQYQGYYFAKPMPFEALKQYLMDEAA 925
Score = 64.3 bits (155), Expect = 4e-14
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Query: 406 RLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWA 465
RL+ SE ++ LF+ +P+P+ V + QF+ +N A +Q FG+S + L T +I
Sbjct: 135 RLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQQEFLAMTVLDIQSEE 194
Query: 466 ESVERAKRIEQVIREQALSNVAVV--LNHRNGDPLTCVISSRLITVDDQPCSVTTLRDIT 523
E + E +I Q + V H+ G + + D+QPC + DIT
Sbjct: 195 EKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHDFEFDNQPCCLILAIDIT 254
Query: 524 QQQRAEAALKSSEEKFAKAFHSSPDAITI 552
++Q A E+ F K + + D + +
Sbjct: 255 EKQAARELAHQREQAFRKLLNDNRDPLLV 283
Score = 46.6 bits (109), Expect = 9e-09
Identities = 88/412 (21%), Positives = 160/412 (38%), Gaps = 43/412 (10%)
Query: 135 QMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGW 194
Q++ IR + T L SE R+ LF +P + + ++ VNQ FG+
Sbjct: 118 QLLRSIRYAIDRNLATTRLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGY 177
Query: 195 PGSQVIGKTSLELGLWVNPEQRHQIVESTRANG--GPLIMEVQFRATSGKVHDGILCTQG 252
+ + T L++ + Q ES N P + +R G + +
Sbjct: 178 SQQEFLAMTVLDIQSEEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHD 237
Query: 253 IELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARA 312
E + + +D TE++ A + ++ L+ D P ++ G R
Sbjct: 238 FEFDNQPCCLILAIDITEKQAARELAHQREQAFRKLLN-------DNRDPLLVISGDRRI 290
Query: 313 AQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQIT-YRVQLENGTSR 371
+ + + ++ Q + P + ++T + + L +G+
Sbjct: 291 CYAN---------------PAAQKLLKLNLEQLESQSLDLPLLSDKLTEWALTLPDGSVA 335
Query: 372 YIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQ--VSPDPICVTR 429
+E R D +G P + +L DI ++ EQ+L +E + F V D I
Sbjct: 336 EVEIH-RSETDWEGQPADLL-SLRDIAERKASEQQLRLLKESLEASFNGVVIVDAI---- 389
Query: 430 QDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVER-AKRIEQVIRE-QALSNVA 487
+ I +NPAF + G+S A++LGR + + ER + +IE++ R NV
Sbjct: 390 EPDMPVIYVNPAFERITGYSEAEMLGRNCRIL----QGNERDSLQIEEIHRGLSQAENVH 445
Query: 488 VVLNH--RNGDPL--TCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSS 535
VV+ + ++G P IS + + DIT+Q+R E L S
Sbjct: 446 VVIRNFRKDGQPFWNDLYISPIFNAQGNVTHFIGVQNDITEQKRYEEELSFS 497
Score = 40.8 bits (94), Expect = 5e-07
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 518 TLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDE 577
++R + A L SE ++ F ++P+ + + + ++L VN + GYS E
Sbjct: 122 SIRYAIDRNLATTRLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQQE 181
Query: 578 VIGHTVYEIGIWADDKQRSALLAELRERGRVHHREM---LGRNKRGDILTVEVSVEPITL 634
+ TV +I ++K R E ++ + R+K+G ++ +V +
Sbjct: 182 FLAMTVLDIQS-EEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHDFEF 240
Query: 635 NEVDCLLLTARDVSQLKNAQAQIRH 659
+ C L+ A D+++ K A ++ H
Sbjct: 241 DNQPCCLILAIDITE-KQAARELAH 264