Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1047 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) from Synechococcus elongatus PCC 7942

 Score =  345 bits (885), Expect = 1e-98
 Identities = 213/587 (36%), Positives = 322/587 (54%), Gaps = 34/587 (5%)

Query: 521  DITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIG 580
            DI+ +++ EA L++SEE++     +  D + + +   G YL V+     L G+S++E++G
Sbjct: 478  DISDRKKIEAELQTSEERYRLLAENMNDLVCLHQA-DGTYLYVSPSAEALLGFSSEEMVG 536

Query: 581  HTVYEIGIWADDKQRSALLAELRERGRVHHREMLG---------RNKRGDILTVEVSVEP 631
               Y+     +D  R         R   H   ++G         R K G  +  E   +P
Sbjct: 537  QNPYDF-FHPEDCDRI--------RDEAHQAVLMGAELPIVYRMRKKLGGYIWFETLTKP 587

Query: 632  ITLNE--VDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR- 688
            I  ++  V  L  T+RDV+Q    Q Q+++ A HD LT L NR LL++RL   +   KR 
Sbjct: 588  IMDDQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRL 647

Query: 689  HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748
             N + A+LFLDLD FK INDSLGH  GD +L  I  +L++ +R  D  ARLGGDEFVVL+
Sbjct: 648  QNYKYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLV 707

Query: 749  SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808
              ++   E ++   R LA      +  P+ L+ + +  + SIG+        +   LL+ 
Sbjct: 708  EDIQTFDEPIKVAERILA-----AIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRD 762

Query: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868
            AD A+YRAK  GR   ++F + M   A  RL +ENDLR A+AR E  L++QP +  +  +
Sbjct: 763  ADTAMYRAKSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGK 822

Query: 869  IVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTD---GLI 925
            I G E L+RW HP  G + P   I + EE+GLI  +  W+L++AC    R L++      
Sbjct: 823  ITGFEALIRWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQAC----RQLSEWQASYS 878

Query: 926  DADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMC 985
             A D ++ VN+S +  + +  +  +   L   ++    LTLEITE ++I+N + TI  + 
Sbjct: 879  QAADLSMSVNLSAQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLA 938

Query: 986  ELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMAR 1045
             +   G+  ++DDFGTGYSSL+YL +LPV+ LK+D SFVR    +  + +IV  I+A+  
Sbjct: 939  AINEQGIEISIDDFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNN 998

Query: 1046 SLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQMLL 1092
             L L  IAEG+E  EQL  L +LG    QGYL +RPL   +  Q+ L
Sbjct: 999  QLGLKAIAEGIETHEQLDLLSQLGYQYGQGYLFARPLNAKDVEQLFL 1045



 Score = 66.2 bits (160), Expect = 1e-14
 Identities = 62/273 (22%), Positives = 130/273 (47%), Gaps = 25/273 (9%)

Query: 267 DTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSG----MLYGSARAAQLHGLPPIP 322
           + ++R +AE AL++SQ R     D+     + + +         Y S+   +++G+ P  
Sbjct: 347 ELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGIDPET 406

Query: 323 FHESFDAFFEGVP----EHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRAR 378
             E+ +  +  +     E+ + S+ ++ ++L+      +++ YR+  +NG  ++++ RAR
Sbjct: 407 ALENSNVVWGMIHPEDIEYLKTSIIKSQQTLK-----TWKVEYRIITKNGELKWMQGRAR 461

Query: 379 LYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEI 438
             R + G      G ++DI+D+ + E  L  SEE++  L +   D +C+ + D G ++ +
Sbjct: 462 PTRQENGETF-WDGLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQAD-GTYLYV 519

Query: 439 NPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPL 498
           +P+     G+SS +++G+   +        E   RI     +  L    + + +R    L
Sbjct: 520 SPSAEALLGFSSEEMVGQNPYDF----FHPEDCDRIRDEAHQAVLMGAELPIVYRMRKKL 575

Query: 499 TCVISSRLIT---VDDQPCSV---TTLRDITQQ 525
              I    +T   +DDQ   +   TT RD+TQ+
Sbjct: 576 GGYIWFETLTKPIMDDQGVVIGLQTTSRDVTQR 608



 Score = 47.4 bits (111), Expect = 6e-09
 Identities = 65/285 (22%), Positives = 117/285 (41%), Gaps = 33/285 (11%)

Query: 141 REITRQRERETALINSEKRFATLFHLSPNAILLTR-RRDG--MIFEVNQHFEDMFGWPGS 197
           +E++ + + E AL  S+ RF  +    P  I   + R+DG      ++  F +++G    
Sbjct: 346 QELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGIDPE 405

Query: 198 QVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVHDGILCTQGIELE- 256
             +  +++  G+ ++PE    +  S        I++ Q    + KV   I+   G EL+ 
Sbjct: 406 TALENSNVVWGM-IHPEDIEYLKTS--------IIKSQQTLKTWKVEYRIITKNG-ELKW 455

Query: 257 ------------GVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSG 304
                       G TF     +D ++RK+ E  L+ S+ER  L  ++             
Sbjct: 456 MQGRARPTRQENGETFWDGLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGT 515

Query: 305 MLYGSARAAQLHGLPPIPF--HESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYR 362
            LY S  A  L G           +D F     +  R+   QA     E P     I YR
Sbjct: 516 YLYVSPSAEALLGFSSEEMVGQNPYDFFHPEDCDRIRDEAHQAVLMGAELP-----IVYR 570

Query: 363 VQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRL 407
           ++ + G   + E+  +   DDQG+ + +  T  D+T ++E + +L
Sbjct: 571 MRKKLGGYIWFETLTKPIMDDQGVVIGLQTTSRDVTQRIEIQNQL 615



 Score = 43.9 bits (102), Expect = 6e-08
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 56  SRGTQALFGFDPQRPL-----------PADIDYL--DLLPEEDRARTRQVFQAVVNGEPV 102
           S G + ++G DP+  L           P DI+YL   ++  +   +T +V          
Sbjct: 393 SSGFREVYGIDPETALENSNVVWGMIHPEDIEYLKTSIIKSQQTLKTWKV---------- 442

Query: 103 EQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMIGVIREITRQRERETALINSEKRFAT 162
                +RI   +G L W++     T   +G     G+I +I+ +++ E  L  SE+R+  
Sbjct: 443 ----EYRIITKNGELKWMQGRARPTRQENGETFWDGLIIDISDRKKIEAELQTSEERYRL 498

Query: 163 LFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGK 202
           L   + N ++   + DG    V+   E + G+   +++G+
Sbjct: 499 LAE-NMNDLVCLHQADGTYLYVSPSAEALLGFSSEEMVGQ 537