Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  407 bits (1045), Expect = e-117
 Identities = 265/737 (35%), Positives = 392/737 (53%), Gaps = 30/737 (4%)

Query: 371  RYIESRARLYR------DDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDP 424
            R+I    R+Y       D+   PL +  T  D+T QV  E  L A+E K+ ++F+ + + 
Sbjct: 118  RHISGSERVYSLRFSPLDNGPHPLLVVITR-DMTAQVAAENALRAAEGKYRAIFENAVEG 176

Query: 425  ICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIG--LWAESVERAKRIEQVIREQA 482
            I  +  D G ++++NPA  + +G++S   L     +I   L+ +  +R +  ++++RE  
Sbjct: 177  IYQSTPD-GTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGE-FQRLMRETG 234

Query: 483  -LSNVAVVLNHRNGDPLTCVISSRLITVDDQPCSVT--TLRDITQQQRAEAALKSSEEKF 539
             + +    +   +G  +    ++R +   D        T+ DIT Q++++  ++      
Sbjct: 235  EVRDFTAEVWRCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRL----L 290

Query: 540  AKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALL 599
             K F S  + I + ER       VN  F  +TG    ++ G           +    A +
Sbjct: 291  GKVFTSIAEGIVLLERDL-TVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATV 349

Query: 600  AELRERGRVHHREMLGRNKRGDILTVEVSVEPITLN--EVDCLLLTARDVSQLKNAQAQI 657
            A   +R  +   E+ G  + G   + E++V  +     E    +    D+++ K  +  I
Sbjct: 350  AAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHI 409

Query: 658  RHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDT 717
            R  A  D LT+LPNR L+MDRL Q +   +R   +  ++FLDLD FK INDS GH  GD 
Sbjct: 410  RFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDE 469

Query: 718  VLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPM 777
            VLK+   RL   VR+ D+V RLGGDEF+V+LS +E            +A+ +   L+EP 
Sbjct: 470  VLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAY-----IAEKILYSLSEPF 524

Query: 778  SLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASE 837
             + G  +   PS+G+   PDHG T  DLL+ AD+A+Y AK  G     +F   M + +  
Sbjct: 525  PIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLA 584

Query: 838  RLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEE 897
             L ME+DLR ALAR E  LHFQP+V A D  ++GAE L+RW HP+ G   P  FI + EE
Sbjct: 585  LLTMESDLRHALARDEFELHFQPKVRA-DLTLIGAEALIRWRHPEKGLINPGDFIPLAEE 643

Query: 898  SGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDY 957
            SGLIL +G W L EACD       +GL      ++ VN+SPRQF+    V  V + L + 
Sbjct: 644  SGLILPIGRWTLREACDRVMSWRAEGLTIP---SVSVNVSPRQFQDQTLVETVRQILVET 700

Query: 958  RLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDAL 1017
             L  + L LEITE ++  ++E  +  +  LK  GV+ ++DDFGTGYSSL YLK  P+D L
Sbjct: 701  GLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTL 760

Query: 1018 KIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYL 1077
            KIDQ+FVRD      DA IV  I+A+AR+L  +V+AEGVE  EQ  FL    C  +QG+L
Sbjct: 761  KIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFL 820

Query: 1078 HSRPLPLPEFRQMLLEA 1094
            +SRPLP  EF   L  A
Sbjct: 821  YSRPLPPAEFTTFLRTA 837



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 70/367 (19%), Positives = 127/367 (34%), Gaps = 22/367 (5%)

Query: 177 RDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVESTRA--NGGPLIMEV 234
           RDG+I   N       G     +IG          +     ++VE   A   G P+    
Sbjct: 56  RDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPADALAVQKVVEGAIALHGGVPVRRIA 115

Query: 235 QFRATSGKVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQL 294
             R  SG      L    ++      L+    D T +  AE AL+ ++ +     ++A  
Sbjct: 116 HIRHISGSERVYSLRFSPLDNGPHPLLVVITRDMTAQVAAENALRAAEGKYRAIFENAVE 175

Query: 295 GTWDWHIPSGMLYGSARAAQLHGLP-PIPFHESF-----DAFFEGVPEHERNSMRQAYRS 348
           G +        L  +   A+++G   P      F       + +G    E   + +    
Sbjct: 176 GIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGEFQRLMRETGE 235

Query: 349 LREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLS 408
           +R+        T  V   +G + +I   AR  R      L   GT+ DIT Q + ++ + 
Sbjct: 236 VRD-------FTAEVWRCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMR 288

Query: 409 ASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESV 468
              + F S+     + I +  +D      +NPAF    G     + GR A          
Sbjct: 289 LLGKVFTSI----AEGIVLLERDL-TVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHEN 343

Query: 469 ERAKRIEQVIREQALSNVAVVLNHRNGDPLT--CVISSRLITVDDQPCSVTTLRDITQQQ 526
           +    +   +    L    +    R G P +    +++      +    V  + DIT+++
Sbjct: 344 DFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRK 403

Query: 527 RAEAALK 533
           R E  ++
Sbjct: 404 RDEEHIR 410