Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

 Score =  358 bits (920), Expect = e-102
 Identities = 244/703 (34%), Positives = 370/703 (52%), Gaps = 42/703 (5%)

Query: 397  ITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGR 456
            I D   ++  L  SE +F + F+ +   I     D G ++ +N       G+   ++L  
Sbjct: 612  IADHRRKQMVLRESEARFRATFEQAAVGIAHLDPD-GHWLRVNHKLCDIVGYPPDELLTL 670

Query: 457  TAEEIGLWAESVERAKRIEQVIREQALS-NVAVVLNHRNGDPLTCVISSRLIT-VDDQPC 514
            + ++I    +     +++E ++  Q  +  +      + G+ L   ++  L+  + + P 
Sbjct: 671  SFQDITHPDDLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPA 730

Query: 515  S-VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGY 573
              ++ + +I  ++ AE  L  +    +  F +S + I +T+   G  L VN  F ++T Y
Sbjct: 731  YFISVVENIQSRKEAELQLLLA----SAVFSNSMEGIFVTDL-KGSILAVNPAFSQITLY 785

Query: 574  STDEVIGHTV-----------YEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDI 622
               EV+G              + + +W D      +L     RG     E+  R + G++
Sbjct: 786  EAAEVLGRNARILQSGRQNREFYVALWQD------VLTIGSWRG-----EIWNRRRDGEV 834

Query: 623  LTVEVSVEPITLN--EVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLS 680
                +S+  +  +  EV   +    D+S++K+++A+  HLA+HDPLT LPNR LL  RL 
Sbjct: 835  FPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNRLLLRSRLD 894

Query: 681  QQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLG 740
              I   +R   R A+LFLDLD FK INDSLGH  GDT+L+ + ARL A +    T+ARLG
Sbjct: 895  HAIERARRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGDTGTLARLG 954

Query: 741  GDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSL-DGQRLQVTPSIGVALIPDHG 799
            GDEFV ++  ++G        V  +A T+ E L EP  L +G  + +  S+G++L P+ G
Sbjct: 955  GDEFVAVIEDIDGI-----PAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISLFPEDG 1009

Query: 800  TTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQ 859
              P  LL+ AD AL + K +G      +  T+ +  S RL +E  LR AL +G+  LH+Q
Sbjct: 1010 DNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDFLLHYQ 1069

Query: 860  PQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARM 919
            P +      + G E L+RW        PP +FI + E++GLI+ +G W+L EAC    R 
Sbjct: 1070 PLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACRTMQRW 1129

Query: 920  LTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLED 979
             + G+       L VN+SPRQFR +     V R L+   LP  +L LEITE  +++    
Sbjct: 1130 RSQGMPLTV---LAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIMEQGAA 1186

Query: 980  TISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRA 1039
              ++M  LK  GV  A+DDFGTGYSSL  L+R P+D +KIDQSFVRD P D    EI   
Sbjct: 1187 AEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITAT 1246

Query: 1040 IVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPL 1082
            I+AM R+L L V+AEGVE T+QL FL R  C   QGYL SRP+
Sbjct: 1247 IIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPI 1289



 Score = 38.9 bits (89), Expect = 3e-06
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 62  LFGFDPQRPLPADIDYLDLL-PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWL 120
           + G+ P   L   + + D+  P++ RA  RQ+ +A++ G+     +  R     G   W+
Sbjct: 659 IVGYPPDELLT--LSFQDITHPDDLRADLRQM-EALLAGQIDTYTIEKRYIRKTGESLWI 715

Query: 121 EINGSLTHDPHGRP-QMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDG 179
            +  SL  D H  P   I V+  I  ++E E  L+ +    + +F  S   I +T  + G
Sbjct: 716 NLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLA----SAVFSNSMEGIFVTDLK-G 770

Query: 180 MIFEVNQHFEDMFGWPGSQVIGKTS 204
            I  VN  F  +  +  ++V+G+ +
Sbjct: 771 SILAVNPAFSQITLYEAAEVLGRNA 795