Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  363 bits (932), Expect = e-104
 Identities = 222/559 (39%), Positives = 321/559 (57%), Gaps = 14/559 (2%)

Query: 542  AFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAE 601
            A  ++ +AI IT+   GR   VN+ +  L+GY  D++IG T+  +         +A+ A 
Sbjct: 324  AIAAAANAIVITDGE-GRVEWVNEAYHLLSGYERDQIIG-TLPAVLAGPSAANPTAIEAW 381

Query: 602  LRER-GRVHHREMLGRNKRGDILTVEVSVEPIT--LNEVDCLLLTARDVSQLKNAQAQIR 658
               R G+V   E+   ++ G    V+ ++ PI      +  L+    DV+  K A+ +IR
Sbjct: 382  PTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAEERIR 441

Query: 659  HLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTV 718
            +L+ +D LT LPNR L  DRL Q +   +R +   A++F+DLD F  +ND+LGH  GD +
Sbjct: 442  YLSNYDTLTRLPNRVLFRDRLYQAVVQARRGHGGLAVMFIDLDQFSLVNDTLGHAAGDHL 501

Query: 719  LKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMS 778
            L  I +R+ A+    DTVAR+GGDEF ++ + L  +     +    LA  L +++  P+ 
Sbjct: 502  LMTIASRINAAAEEADTVARVGGDEFALIQTALTSA-----DSAASLARRLIDVIRTPVD 556

Query: 779  LDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASER 838
            L G+ + +  ++G+A+ P  GT P +L+K AD+A+YRA  SG ++   F   M   A+ R
Sbjct: 557  LGGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSNEMNAEAAVR 616

Query: 839  LRMENDLRLALARGE-LALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEE 897
            L +E DLR AL  G+ L LH+Q Q      R VGAE L RW HP LG  PP++FI V E+
Sbjct: 617  LSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPVAED 676

Query: 898  SGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDY 957
            SGLIL +G W+L  A    AR    G        + VN+S  QFRQ   V RV   L  +
Sbjct: 677  SGLILALGDWVLGTALAEYARWRAAG---CGRLTIAVNMSAVQFRQKGLVERVTDLLAQH 733

Query: 958  RLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDAL 1017
             +P + L LE+TE +++Q+ +  ++++  L + G+  ++DDFGTGYSSL YLK   VD L
Sbjct: 734  GVPPEDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKL 793

Query: 1018 KIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYL 1077
            K+DQSFVRD   D NDA I RAI+ +  SL L VIAEGVE  EQ+A+L R GC + QGYL
Sbjct: 794  KVDQSFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYL 853

Query: 1078 HSRPLPLPEFRQMLLEAPA 1096
             + P P     + LL   A
Sbjct: 854  MAYPEPGETVARRLLALDA 872