Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  370 bits (950), Expect = e-106
 Identities = 236/666 (35%), Positives = 357/666 (53%), Gaps = 21/666 (3%)

Query: 433  GQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNH 492
            G+++ IN +    +G S  Q+L RT +EI     S E A+   Q   E  +  V V    
Sbjct: 185  GRYVLINHSVEIAWGRSKEQLLNRTDDEIF----SPELAEEFVQGDYESIVRGVQVTAAE 240

Query: 493  ---RNGDPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDA 549
               ++ D     + +  + V     ++  +  I++   +  A +   E  A  F +S + 
Sbjct: 241  CEAKDIDQSNSWLETTKVPVVSPDGTLEGVIGISRNITSHKAAQEQLELAANIFENSVEG 300

Query: 550  ITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQR-SALLAELRERGRV 608
            + IT+  SG  +EV+  F  +TGYS DEV+G     +     DK     L   L   G+ 
Sbjct: 301  VVITDA-SGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSLLTNGK- 358

Query: 609  HHREMLGRNKRGDILTVEVSVEPI--TLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPL 666
             H E+  R K G I   ++++  +    ++V   +    D+S  K ++ ++  L YHDPL
Sbjct: 359  WHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKELARLVYHDPL 418

Query: 667  TNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARL 726
            T LPNR +L   L Q++    R     AL+F+D+D FKHINDS GH  GD +L  +  RL
Sbjct: 419  TKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAILVEVARRL 478

Query: 727  EASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQ-RLQ 785
               +  E T+ARLG DEF+ +L  +E      ++ V  +   LRE    P  LD +  ++
Sbjct: 479  GQKLGEEATLARLGSDEFIAVLPHVES-----DDSVSLMVSRLREAFDAPFLLDDEGSVR 533

Query: 786  VTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDL 845
            +T S+GVA+ P  G +   LL+ AD A++RAK +GRN    +  ++  A+ E L++++ L
Sbjct: 534  LTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSLTLASVEHLKLQSAL 593

Query: 846  RLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVG 905
              A+ +    L +QP++     + VG E LLRW  PQLG   P+ FI V E  GLI E+G
Sbjct: 594  HDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIFIPVAENIGLINEIG 653

Query: 906  SWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLT 965
             W+L +A    A+ L +G        + VN++  Q +Q  F  +V R LD+  LP + L 
Sbjct: 654  LWVLKQAATQGAQWLAEGKRFG---RISVNVAGPQLQQKQFCAQVKRVLDEAGLPPEYLE 710

Query: 966  LEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVR 1025
            LE+TE  ++ +    I  + +L   GV  ++DDFGTGYSSL YLKRLP+  LKIDQSF+R
Sbjct: 711  LEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPIHKLKIDQSFIR 770

Query: 1026 DAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLP 1085
            D P D N+  I +A++A+  +L+L +IAEGVE  EQ AFLE  GC   QGYL+S+P  + 
Sbjct: 771  DIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQGYLYSKPRMVE 830

Query: 1086 EFRQML 1091
            E  + L
Sbjct: 831  ELAEFL 836



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 394 LLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQV 453
           ++ I+  +   +      E  A++F+ S + + +T   +G  IE++ AFT+  G+S  +V
Sbjct: 270 VIGISRNITSHKAAQEQLELAANIFENSVEGVVIT-DASGNIIEVHGAFTEITGYSRDEV 328

Query: 454 LG 455
           LG
Sbjct: 329 LG 330