Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 714 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  394 bits (1012), Expect = e-113
 Identities = 237/616 (38%), Positives = 346/616 (56%), Gaps = 17/616 (2%)

Query: 486  VAVVLNHRNGDPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHS 545
            + ++ +H +   L   I   +     +P   + L +        A L+S        FH+
Sbjct: 103  IVIITSHSDSGALLDAIEIGIDRYVLKPLKASALLEAMATCARAARLESEHRLATTVFHA 162

Query: 546  SPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHT--VYEIGIWADDKQRSALLAELR 603
            S +AI IT+  + R ++VN  F R+TG+S  EV+G    + + GI ++   R  + A + 
Sbjct: 163  SSEAIMITDAEN-RIVDVNPAFTRITGFSRGEVLGRNPRILQSGIQSEHFYRE-MWAAIN 220

Query: 604  ERGRVHHR-EMLGRNKRGDILTVEVSVEPITLNEVDCLLLTAR--DVSQLKNAQAQIRHL 660
            + G  H R E+  R + G++    ++V+ +   E   L   A   D+S+ K A+A+I +L
Sbjct: 221  QYG--HWRGEIWNRRRNGELYPEWLAVDRVLSPEGAVLNYVAMWSDISERKEAEARIHYL 278

Query: 661  AYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLK 720
            A++D LT+LPNR L  DR +Q +   +R++   AL+F+DLD FK +ND+LGH VGD +LK
Sbjct: 279  AHYDALTDLPNRVLFNDRFTQALIHARRYDQSVALMFVDLDRFKVVNDTLGHRVGDELLK 338

Query: 721  IITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLD 780
             +  RL   VR EDTV+R GGDEFVVLL+ L+ S +        ++D + E LAEPM  +
Sbjct: 339  QVAERLRRCVREEDTVSRQGGDEFVVLLANLDMSAD-----AAVVSDKILEALAEPMYFE 393

Query: 781  GQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLR 840
            G  L VT SIG+A  P  G  P  L+K AD+A+YRAK  GRN  Q F   +++ A  RL 
Sbjct: 394  GHELSVTCSIGIACYPSDGADPDTLMKNADLAMYRAKSVGRNNYQFFSPELEQGALTRLT 453

Query: 841  MENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGL 900
            +EN +R AL R E  LH+ PQVD    R++  E L+RW HP+ G   PSQFI + EESGL
Sbjct: 454  LENAMRRALDRDEFELHYLPQVDNPSGRLLSLEALIRWQHPERGLLLPSQFIPLAEESGL 513

Query: 901  ILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLP 960
            +L +  W+L       A      L       + +N+   Q RQ DF   + R L +  + 
Sbjct: 514  VLPISLWVLRRVARQLADWRRQNLTLVP---VAINLCEAQLRQPDFAEALGRILSEEGVE 570

Query: 961  RQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKID 1020
             + + LE TEG ++ + E  +  +  LKR GV   +DDFG GYS+L  L+RLPVD LKID
Sbjct: 571  GRWIELEFTEGALMHDTERNLRVLSALKRLGVGITLDDFGVGYSNLNVLRRLPVDTLKID 630

Query: 1021 QSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSR 1080
            +S V D   + +DA IV AI++MA+S++L V+AEGVE  +Q  F +   C   QG+  S+
Sbjct: 631  RSLVTDVTRNEDDAVIVDAIISMAQSMNLKVVAEGVETADQAGFFKARACAEIQGHFFSK 690

Query: 1081 PLPLPEFRQMLLEAPA 1096
             +   E   ML  APA
Sbjct: 691  AIGAVEVAAMLGHAPA 706



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 387 PLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTF 446
           PL+ A  LL+      R  RL +      ++F  S + I +T  +  + +++NPAFT+  
Sbjct: 130 PLK-ASALLEAMATCARAARLESEHRLATTVFHASSEAIMITDAEN-RIVDVNPAFTRIT 187

Query: 447 GWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGD--PLTCVISS 504
           G+S  +VLGR    +    +S    + +   I +       +    RNG+  P    +  
Sbjct: 188 GFSRGEVLGRNPRILQSGIQSEHFYREMWAAINQYGHWRGEIWNRRRNGELYPEWLAVDR 247

Query: 505 RLITVDDQPCSVTTLRDITQQQRAEAAL 532
            L         V    DI++++ AEA +
Sbjct: 248 VLSPEGAVLNYVAMWSDISERKEAEARI 275



 Score = 37.4 bits (85), Expect = 4e-06
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 152 ALINSEKRFA-TLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLW 210
           A + SE R A T+FH S  AI++T   +  I +VN  F  + G+   +V+G+    L   
Sbjct: 147 ARLESEHRLATTVFHASSEAIMIT-DAENRIVDVNPAFTRITGFSRGEVLGRNPRILQSG 205

Query: 211 VNPEQRHQIVESTRANGGPLIMEVQFRATSGKVH------DGILCTQGIELEGVTFLIST 264
           +  E  ++ + +     G    E+  R  +G+++      D +L  +G  L      ++ 
Sbjct: 206 IQSEHFYREMWAAINQYGHWRGEIWNRRRNGELYPEWLAVDRVLSPEGAVLN----YVAM 261

Query: 265 FVDTTERKRAE 275
           + D +ERK AE
Sbjct: 262 WSDISERKEAE 272