Pairwise Alignments
Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440
Subject, 1104 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS
Score = 359 bits (921), Expect = e-103
Identities = 234/663 (35%), Positives = 339/663 (51%), Gaps = 23/663 (3%)
Query: 433 GQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVA--VVL 490
G+ +E N + G A+VLG+ E W +R+ Q + A A +
Sbjct: 296 GRLLEANQSALDLIGRQPAEVLGQLFWETPWWVHEPLVQQRLRQAVERVAAGGEAQRFEV 355
Query: 491 NHRNGDPLTCVISSRLITVDDQPCSVTTL----RDITQQQRAEAALKSSEEKFAKAFHSS 546
H D + L +V+D+P L RDIT ++ E + + F +S
Sbjct: 356 THMRRDGRLRYVDFILKSVEDEPGQPLQLLAEGRDITDRKEGEEQHRLA----LSVFENS 411
Query: 547 PDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERG 606
D I IT G +EVN FC LTGY+ +E IG + D+ L ++
Sbjct: 412 HDGILITNPE-GLIIEVNRAFCELTGYAREEAIGQPARMLNSGHHDRTYFRQLFQVVSER 470
Query: 607 RVHHREMLGRNKRGDILTVEVSVEPITLN--EVDCLLLTARDVSQLKNAQAQIRHLAYHD 664
EM R K G + V ++V + + + + D++Q K Q ++ LA++D
Sbjct: 471 GFWKGEMWNRTKSGAVTAVLMTVSAVHDDGGRISHFVGVFSDITQQKENQRRLERLAHYD 530
Query: 665 PLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITA 724
LT LPNR L+ DRL +A +R N A+ +LDLD FK INDS GH GD +L +
Sbjct: 531 ALTGLPNRTLMSDRLHLAMAQAQRRNKLLAVCYLDLDGFKAINDSHGHQAGDRLLMDVAE 590
Query: 725 RLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRL 784
RL S+R DT ARLGGDEFV+LL+ L E + ++ + L LA P +L GQ
Sbjct: 591 RLRRSLRGGDTAARLGGDEFVLLLNDLTALSE-----LEQILERLLLSLAAPFALQGQTA 645
Query: 785 QVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMEND 844
V+ SIGV + P L++ AD A+Y AK SGRN QLF T A +
Sbjct: 646 SVSGSIGVTIYPTDDADADTLVRHADQAMYAAKQSGRNRYQLFDTEQDSRARSLREAIVN 705
Query: 845 LRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEV 904
R AL + + L++QP+V+ IVG E L+RW HP+ G P+ F+ LEE+ LI+++
Sbjct: 706 ARAALEQEQFRLYYQPKVNLCSGLIVGFEALIRWQHPEQGILAPAAFLVDLEETDLIVDI 765
Query: 905 GSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDY-RLPRQM 963
G W+++ A G D+ + +NI+ R +Q DF+ R+ R+L+ + +P ++
Sbjct: 766 GDWVMETALAQLEAWQALGW----DYPVSINIAARHLQQPDFLPRLQRALERHPAVPPRL 821
Query: 964 LTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSF 1023
L LEI E ++++ + +R GV FA+DDFGTGYSSL+Y K LP LKIDQSF
Sbjct: 822 LELEILETAALEDVGQVSLVIAACQRLGVGFALDDFGTGYSSLSYFKSLPARTLKIDQSF 881
Query: 1024 VRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLP 1083
VRD DP IV +V + + +V+AEG+E E L RLGC QGY +RP+P
Sbjct: 882 VRDMLHDPEALAIVEGVVGLTSAFQRSVVAEGMETVEHGVMLLRLGCIHAQGYAIARPMP 941
Query: 1084 LPE 1086
E
Sbjct: 942 AAE 944
Score = 53.9 bits (128), Expect = 7e-11
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 342 MRQAY-RSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQ 400
+RQA R G A +++T+ +G RY++ + D+ G PL++ DITD+
Sbjct: 337 LRQAVERVAAGGEAQRFEVTH--MRRDGRLRYVDFILKSVEDEPGQPLQLLAEGRDITDR 394
Query: 401 VEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEE 460
E E++ S+F+ S D I +T + G IE+N AF + G++ + +G+ A
Sbjct: 395 KEGEEQ----HRLALSVFENSHDGILITNPE-GLIIEVNRAFCELTGYAREEAIGQPARM 449
Query: 461 IGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQ---PCSVT 517
+ +++ QV+ E+ + N +T V+ + DD V
Sbjct: 450 LNSGHHDRTYFRQLFQVVSERGFWK-GEMWNRTKSGAVTAVLMTVSAVHDDGGRISHFVG 508
Query: 518 TLRDITQQQRAEAALK 533
DITQQ+ + L+
Sbjct: 509 VFSDITQQKENQRRLE 524
Score = 46.6 bits (109), Expect = 1e-08
Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 34/285 (11%)
Query: 88 RTRQVFQAVV-NGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRP-QMIGVIREITR 145
R RQ + V GE + H R DG L +++ D G+P Q++ R+IT
Sbjct: 336 RLRQAVERVAAGGEAQRFEVTHMRR--DGRLRYVDFILKSVEDEPGQPLQLLAEGRDITD 393
Query: 146 QRERETALINSEKRFA-TLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIGKTS 204
++E E + R A ++F S + IL+T +G+I EVN+ F ++ G+ + IG+ +
Sbjct: 394 RKEGE-----EQHRLALSVFENSHDGILITNP-EGLIIEVNRAFCELTGYAREEAIGQPA 447
Query: 205 LELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVHDGILCTQGIELEG--VTFLI 262
L + + + + G E+ R SG V ++ + +G ++ +
Sbjct: 448 RMLNSGHHDRTYFRQLFQVVSERGFWKGEMWNRTKSGAVTAVLMTVSAVHDDGGRISHFV 507
Query: 263 STFVDTTERKRAEQALKD---------------SQERLDLALDSAQLGTWDWHIPSGMLY 307
F D T++K ++ L+ +RL LA+ AQ + L
Sbjct: 508 GVFSDITQQKENQRRLERLAHYDALTGLPNRTLMSDRLHLAMAQAQRRNKLLAVCYLDLD 567
Query: 308 GSARAAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREG 352
G HG H++ D V E R S+R + R G
Sbjct: 568 GFKAINDSHG------HQAGDRLLMDVAERLRRSLRGGDTAARLG 606
Score = 40.4 bits (93), Expect = 8e-07
Identities = 66/276 (23%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 142 EITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPGSQVIG 201
++ R R +A+ N F + L G + E NQ D+ G ++V+G
Sbjct: 270 QLRESRLRLSAVFNQTSEFIGILDLK-----------GRLLEANQSALDLIGRQPAEVLG 318
Query: 202 KTSLELGLWVN----PEQRHQIVESTRANGGPLIMEVQFRATSGKVH--DGILCTQGIEL 255
+ E WV+ ++ Q VE A G EV G++ D IL + E
Sbjct: 319 QLFWETPWWVHEPLVQQRLRQAVERVAAGGEAQRFEVTHMRRDGRLRYVDFILKSVEDEP 378
Query: 256 EGVTFLISTFVDTTERKRAEQALKDSQERLDLAL-DSAQLGTWDWHIPSGMLYGSARA-A 313
L++ D T+RK E+ Q RL L++ +++ G + P G++ RA
Sbjct: 379 GQPLQLLAEGRDITDRKEGEE-----QHRLALSVFENSHDGILITN-PEGLIIEVNRAFC 432
Query: 314 QLHGLPPIPFHESF--DAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSR 371
+L G E+ A H+R RQ ++ + E G ++ + ++G
Sbjct: 433 ELTGYAR---EEAIGQPARMLNSGHHDRTYFRQLFQVVSE--RGFWKGEMWNRTKSGAVT 487
Query: 372 YIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRL 407
+ DD G G DIT Q E ++RL
Sbjct: 488 AVLMTVSAVHDDGGRISHFVGVFSDITQQKENQRRL 523