Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 833 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  404 bits (1038), Expect = e-116
 Identities = 263/697 (37%), Positives = 377/697 (54%), Gaps = 28/697 (4%)

Query: 406  RLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWA 465
            R+ A  E+ + +     D + +T   +G  +  N    + FG+++A+ +GR    + L+A
Sbjct: 152  RMEAKVEEQSQILDHIHDSV-ITMDLSGYIMGWNKGAERLFGYTAAEAVGRHI--LFLYA 208

Query: 466  ESVERAKRIEQVIREQALSN-----VAVVLNHRNGDPLTCVISSRLITVD-DQPCS-VTT 518
            +        E  +   A  +       V    ++G+     +S  L   +  +P   +  
Sbjct: 209  DDGSETLEEEDDLFYNAFLDHGRREFEVRRRKKSGEVFWASVSLSLSRNEAGEPAGLIGY 268

Query: 519  LRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEV 578
            L DIT Q   E  L+      AK F  + +A+ +T+    R L VN  FC +TG+S  EV
Sbjct: 269  LVDITNQLEREEKLRLH----AKIFEHNSEAVIVTDAMQ-RVLSVNKAFCDITGFSEAEV 323

Query: 579  IGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILTVEVSVEPI--TLNE 636
                   +    DD   +A +            E+  R K GD   V VS+  +  T   
Sbjct: 324  RMSLPALLQPTRDDPNLAAEIQVALASSGAWQGELWDRRKNGDTYPVWVSISSVKNTRGI 383

Query: 637  VDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALL 696
            +    L   D+S+ K A+ QI  LAY+D LT LPNR+LL   L Q +   +R+   GA+L
Sbjct: 384  LSHYFLVFSDISERKEAERQIYRLAYYDALTGLPNRSLLFSLLEQALIEAQRNQTHGAVL 443

Query: 697  FLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRE 756
            F+DLD FK INDS GH   D +LK +  RL+ ++R ED VARLGGDEF+V L  +   RE
Sbjct: 444  FVDLDRFKTINDSFGHAPADALLKEVARRLQETLRAEDVVARLGGDEFIVALFDIT-KRE 502

Query: 757  HVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRA 816
            H     +++ D L    AEP  +    + +T SIG+A+ PD G     LL+ AD A+YR 
Sbjct: 503  HAALVGQKILDAL----AEPFQIVHHEVLLTASIGIAVFPDDGRDAETLLRNADTAMYRV 558

Query: 817  KDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLL 876
            K +       +   M   + ERL++E  LR A+ R E  L++QPQV+    RIVGAE L+
Sbjct: 559  KQTSGGPL-FYSQEMNLRSLERLKLEGALRKAVERQEFRLYYQPQVELATGRIVGAEALI 617

Query: 877  RWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNI 936
            RWHHP+ G  PP+ FI + EE+GLI+ +G+W+LD AC         G    +D  + VN+
Sbjct: 618  RWHHPEQGMIPPTAFIPLAEETGLIVSIGAWVLDAACRQGRLWREAGY---EDLTIAVNL 674

Query: 937  SPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAM 996
            SPRQFR       V  +L+ +  P + L LEITEG+++ N E  I  + +  + GV  A+
Sbjct: 675  SPRQFRPG-LSQLVNETLERHAFPGENLELEITEGMLMHNSEAVIQMLEDFHQAGVRLAL 733

Query: 997  DDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGV 1056
            DDFGTGYSSL YLK+ P+D LKID+SFV   P D +D+ I +AI++MA++L L VIAEGV
Sbjct: 734  DDFGTGYSSLAYLKKFPIDNLKIDRSFVSGIPHDGDDSAIAKAIISMAKNLRLLVIAEGV 793

Query: 1057 ELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQMLLE 1093
            E  EQL FL   GC   QGYL S P+P+ +F Q+LLE
Sbjct: 794  ETEEQLDFLRAAGCDEIQGYLFSPPVPVEDF-QLLLE 829



 Score = 48.5 bits (114), Expect = 2e-09
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 32/258 (12%)

Query: 36  LNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYL------DLLPEEDRART 89
           L+  H      D+    + W++G + LFG+     +   I +L      + L EED    
Sbjct: 164 LDHIHDSVITMDLSGYIMGWNKGAERLFGYTAAEAVGRHILFLYADDGSETLEEEDDL-- 221

Query: 90  RQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVIREITRQRE 148
              + A ++    E  +R R +   G + W  ++ SL+ +  G P  +IG + +IT Q E
Sbjct: 222 --FYNAFLDHGRREFEVRRRKK--SGEVFWASVSLSLSRNEAGEPAGLIGYLVDITNQLE 277

Query: 149 RETALINSEKRFATLFHLSPNAILLTRRRDGM--IFEVNQHFEDMFGWPGSQVIGKTSLE 206
           RE  L    +  A +F  +  A+++T   D M  +  VN+ F D+ G+  ++V       
Sbjct: 278 REEKL----RLHAKIFEHNSEAVIVT---DAMQRVLSVNKAFCDITGFSEAEVRMSLPAL 330

Query: 207 LGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVH------DGILCTQGIELEGVTF 260
           L    +       ++   A+ G    E+  R  +G  +        +  T+GI    ++ 
Sbjct: 331 LQPTRDDPNLAAEIQVALASSGAWQGELWDRRKNGDTYPVWVSISSVKNTRGI----LSH 386

Query: 261 LISTFVDTTERKRAEQAL 278
               F D +ERK AE+ +
Sbjct: 387 YFLVFSDISERKEAERQI 404



 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 355 GNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKF 414
           G  +   R + ++G   +      L R++ G P  + G L+DIT+Q+ERE++L       
Sbjct: 230 GRREFEVRRRKKSGEVFWASVSLSLSRNEAGEPAGLIGYLVDITNQLEREEKL----RLH 285

Query: 415 ASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQV 453
           A +F+ + + + VT     + + +N AF    G+S A+V
Sbjct: 286 AKIFEHNSEAVIVT-DAMQRVLSVNKAFCDITGFSEAEV 323



 Score = 26.6 bits (57), Expect = 0.008
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 525 QQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVY 584
           +Q   A +++  E+ ++      D++ IT   SG  +  N G  RL GY+  E +G  + 
Sbjct: 146 RQEDLARMEAKVEEQSQILDHIHDSV-ITMDLSGYIMGWNKGAERLFGYTAAEAVGRHI- 203

Query: 585 EIGIWADD------KQRSALLAELRERGRVHHREMLGRNKRGDILTVEVSV 629
            + ++ADD      ++         + GR    E+  R K G++    VS+
Sbjct: 204 -LFLYADDGSETLEEEDDLFYNAFLDHGR-REFEVRRRKKSGEVFWASVSL 252