Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 986 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  374 bits (960), Expect = e-107
 Identities = 204/447 (45%), Positives = 278/447 (62%), Gaps = 10/447 (2%)

Query: 646  DVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKH 705
            +V++   AQ ++ HLA+ D LT LPNR L  +RL   +A+++R   R A++F+DLD FK 
Sbjct: 271  NVTETVEAQQRLTHLAHFDSLTGLPNRLLFRERLKAALAMVQRQGGRLAVMFIDLDRFKV 330

Query: 706  INDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREH-VEEKVRE 764
            +ND+LGH  GD +L+ + AR+   +R  DTV RLGGDEF VL+   E  RE+ V    R 
Sbjct: 331  VNDTLGHLAGDALLQQVAARIGGCLRASDTVGRLGGDEFAVLVPDPE--REYDVTVVARR 388

Query: 765  LADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTT 824
            L DTL    A+P++L+GQ L V+ SIG+ L PD       L++ AD A+YRAK+ GRN  
Sbjct: 389  LVDTL----AQPITLEGQELFVSASIGITLYPDDCDDLEKLIRNADTAMYRAKELGRNNF 444

Query: 825  QLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLG 884
            Q F   M     E+L++E DLR A+ R E  LHFQP+V      I G E LLRW HP  G
Sbjct: 445  QFFTAAMNARVKEQLQLETDLRRAVQRQEFILHFQPKVSCSHGGITGFEALLRWQHPVRG 504

Query: 885  QQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQN 944
               P +FI +LEE+GLI+ VG+W+L +AC   A     G        + VN+S RQ +  
Sbjct: 505  LVSPMEFIPLLEETGLIVPVGTWVLQQACQQAAAWHLAG---HGQLTVAVNLSARQLQSE 561

Query: 945  DFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYS 1004
              V  V ++L+D  LP Q L LE+TE +++ ++ED I+ +  LK  GV  ++DDFGTGYS
Sbjct: 562  ALVQDVRQALEDSGLPPQALELELTESLLMSHVEDNIALLNRLKAMGVQLSVDDFGTGYS 621

Query: 1005 SLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAF 1064
            SL YLKRLP+D +K+D++FV+D   DP DA I RA++ MA +L L V+AEGVE   Q+A 
Sbjct: 622  SLAYLKRLPLDTVKVDRAFVQDITADPGDASITRAVITMAHNLRLKVVAEGVETEGQIAL 681

Query: 1065 LERLGCHLYQGYLHSRPLPLPEFRQML 1091
            L    C   QGY  SRP+P PE   +L
Sbjct: 682  LVANHCDEMQGYYFSRPVPAPEALALL 708



 Score = 40.0 bits (92), Expect = 9e-07
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 14/146 (9%)

Query: 342 MRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTLLDITDQV 401
           MR+A   +R  P G      R+   NG  R++  R+   +D+QG    + G   DITD V
Sbjct: 86  MREA---VRRNPRGGVNEVVRIVHPNGGERWLHIRSFDMKDEQGNAHSVGGVGTDITDLV 142

Query: 402 EREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQ-----TFGWSSAQV--- 453
            + + L ASE     +    P  I +   + G  + +N  +++     +   SSA V   
Sbjct: 143 LQREALRASEAVQKGVLDALPAHIAILDAE-GIIVAVNEPWSRFAAENSHDPSSAGVGCN 201

Query: 454 LGRTAEEIGLWAESVERAKRIEQVIR 479
             R  E    W ES E A+ I   IR
Sbjct: 202 YIRVCER--SWGESAEEAQDIAVGIR 225



 Score = 28.5 bits (62), Expect = 0.003
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 44  WLWDIESGRVSWSRGTQAL-FGFDPQRPLPADIDYLDLLPEEDRARTRQVFQAVVNGEPV 102
           WL DI + RV ++    A  +G   +       D+L  +  +D  R R+  +    G   
Sbjct: 40  WLIDIAARRVVYANPAYATHWGGSVEDLYRNRFDWLRFIHPDDLDRMREAVRRNPRGGVN 99

Query: 103 EQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQMIG----VIREITRQRE 148
           E     RI  P+G   WL I      D  G    +G     I ++  QRE
Sbjct: 100 EVV---RIVHPNGGERWLHIRSFDMKDEQGNAHSVGGVGTDITDLVLQRE 146