Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 959 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  418 bits (1075), Expect = e-121
 Identities = 247/556 (44%), Positives = 326/556 (58%), Gaps = 15/556 (2%)

Query: 540  AKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHT--VYEIGIWADDKQRSA 597
            A+ F S  + + IT+  + R + VN  F R+TGY  +EV+G    ++  G    D  R  
Sbjct: 404  AQVFESGNEGMVITDGDN-RIITVNQAFTRITGYRPEEVVGQNPAIFSSGRHDADFYRQ- 461

Query: 598  LLAELRERGRVHHREMLGRNKRGDILTVEVSVEPITLN--EVDCLLLTARDVSQLKNAQA 655
            +  +LR+ G     E+  R K G +    +++  +     +    +    D+++ K A+A
Sbjct: 462  MWHQLRDTG-AWSGEIWNRRKDGSLYPEWLNISSVRDEGGQASHYIAAFSDITERKAAEA 520

Query: 656  QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715
            Q+RHLA +D LTNLPNR LL DRL Q IA  +R     ALLFLDLD FK+INDSLGH VG
Sbjct: 521  QVRHLAEYDALTNLPNRVLLQDRLGQAIAAARRAGSCLALLFLDLDRFKNINDSLGHTVG 580

Query: 716  DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAE 775
            D VL  +  RL  +VR  DTV+RLGGDEFV+LL  LE   +        +A+ L   LA 
Sbjct: 581  DQVLCQVGERLLTAVRASDTVSRLGGDEFVLLLPQLESPAQ-----AASVAEKLLLTLAT 635

Query: 776  PMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAA 835
            P+++D   L VTPSIG+A+ P+ G     LLK AD A+Y AK+SGRN  Q F   M    
Sbjct: 636  PLAIDDYELAVTPSIGIAVFPEDGEDGDTLLKNADAAMYVAKESGRNNYQYFTAAMNARV 695

Query: 836  SERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVL 895
            S+RL +EN+LR ALAR ELALH+QPQ D     +VG E LLRW  P+ G  PP +FI V 
Sbjct: 696  SQRLLLENNLRQALARQELALHYQPQYDLHSGTLVGCEALLRWRQPEQGLIPPDRFIPVA 755

Query: 896  EESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLD 955
            EE+GLIL +G W+L EAC         GL       + VNIS  QFRQ +    V  +L 
Sbjct: 756  EETGLILPIGQWVLREACRQAQAWQDAGL---PPLVVAVNISAVQFRQANLAALVQEALA 812

Query: 956  DYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVD 1015
               L    L LE+TE +++++ E     + +LK  G+  A+DDFGTGYSSL YLKR  +D
Sbjct: 813  ASGLSPCWLELELTESMLMEDGERHTQTLAQLKAMGIRLALDDFGTGYSSLAYLKRFSLD 872

Query: 1016 ALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQG 1075
             LKID+SF+RD P D  DA I  AI+ MAR L L  +AEGVE  +Q +FL   GC   QG
Sbjct: 873  KLKIDRSFIRDLPQDAEDAAITTAIIGMARDLGLETLAEGVETEQQWSFLAERGCAQMQG 932

Query: 1076 YLHSRPLPLPEFRQML 1091
            +L +RP+P  E   +L
Sbjct: 933  FLRARPMPADEITALL 948



 Score = 30.0 bits (66), Expect = 9e-04
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 178 DGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFR 237
           D  I  VNQ F  + G+   +V+G+         +    ++ +     + G    E+  R
Sbjct: 420 DNRIITVNQAFTRITGYRPEEVVGQNPAIFSSGRHDADFYRQMWHQLRDTGAWSGEIWNR 479

Query: 238 ATSGKVHDGILCTQGIELEG--VTFLISTFVDTTERKRAEQALKDSQE 283
              G ++   L    +  EG   +  I+ F D TERK AE  ++   E
Sbjct: 480 RKDGSLYPEWLNISSVRDEGGQASHYIAAFSDITERKAAEAQVRHLAE 527



 Score = 27.3 bits (59), Expect = 0.006
 Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 415 ASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRI 474
           A +F+   + + +T  D  + I +N AFT+  G+   +V+G+            +  +++
Sbjct: 404 AQVFESGNEGMVITDGDN-RIITVNQAFTRITGYRPEEVVGQNPAIFSSGRHDADFYRQM 462

Query: 475 EQVIREQALSNVAVVLNHRNGD--PLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAAL 532
              +R+    +  +    ++G   P    ISS           +    DIT+++ AEA +
Sbjct: 463 WHQLRDTGAWSGEIWNRRKDGSLYPEWLNISSVRDEGGQASHYIAAFSDITERKAAEAQV 522

Query: 533 KSSEEKFAKAFHSSPDAITITER 555
           +   E    A  + P+ + + +R
Sbjct: 523 RHLAE--YDALTNLPNRVLLQDR 543