Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 1126 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  372 bits (956), Expect = e-107
 Identities = 221/635 (34%), Positives = 338/635 (53%), Gaps = 31/635 (4%)

Query: 474  IEQVIREQALSNVAVVLNHRNGDPLTC----------------VISSRLITVDDQPCSVT 517
            +E ++RE  +S  A+ + HR+ D L                  V  + L T    P    
Sbjct: 493  VEGLLRESFISP-ALAVQHRHNDELVMQSGQPMRFEEQAFDGGVQRTYLTTKCPLPGPDG 551

Query: 518  TLRDITQQQRAEAALKSSEEKFAKA---FHSSPDAITITERHSGRYLEVNDGFCRLTGYS 574
            +LR +         +K + E+   A     ++ D + IT+   G  L VN  F  +TGY+
Sbjct: 552  SLRGVLGISTDITEIKQTTEQLRLAGVVMENTADGVMITDAR-GVILSVNKAFTDITGYT 610

Query: 575  TDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILTVEVSVEPITL 634
              E +G     +     + +   L+ E      +   E+  R K G +    +++  +  
Sbjct: 611  AAEALGQLPSLLRSDRQEPEFYRLMWETLASTGIWRGEIWNRRKNGALFPEWLTINAVLD 670

Query: 635  NEVDCLLLTA--RDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLR 692
             E   +       D+S +K++Q ++  LA+ DPLT LPNR L  DRL   +   +R+   
Sbjct: 671  QEGKPVNYVGVFSDISAIKHSQDELERLAHFDPLTGLPNRTLFHDRLQHALERAQRYGQE 730

Query: 693  GALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLE 752
             A+L LDLD FK +NDSLGHP GD +L+    R +  VR+EDTV+RLGGDEF ++L+ L 
Sbjct: 731  LAVLLLDLDGFKTVNDSLGHPTGDLLLQQAAHRFKECVRVEDTVSRLGGDEFAIILNNLA 790

Query: 753  GSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIA 812
               + +      +   L + L EP  LDG    VT SIG+A+ P  G TP  L++ AD A
Sbjct: 791  QGTDAIS-----VVKKLLQALQEPFDLDGTAALVTTSIGIAIAPLDGDTPEALVRNADTA 845

Query: 813  LYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGA 872
            +Y AK+ GRN+ + +   M + A ERL  E  LR AL  GE  + +QP+++  D  + GA
Sbjct: 846  MYGAKEGGRNSYRFYQADMTRRAQERLTQERSLRRALEEGEFEVWYQPKLELADGSLCGA 905

Query: 873  EVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNL 932
            E LLRW  P  G   P++FI + E +GLI+ +G  +LD+ C    +    GL+      +
Sbjct: 906  EALLRWRDPARGLVSPAEFIPLAERTGLIVPIGELVLDQVCRQARQWADRGLLAG---RI 962

Query: 933  CVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGV 992
             VN++  Q  ++D+   + ++L+ + LP   L +E+TE +++++       +C+++  GV
Sbjct: 963  AVNVAALQIERSDYAATLRQALEKHGLPATALEVEVTESLIMESPNHARQVLCDIQTLGV 1022

Query: 993  SFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVI 1052
            + A+DDFGTGYSSL YLK LP++ LKID++FV D P + ND  I RAI+A+  SL   + 
Sbjct: 1023 TTAVDDFGTGYSSLAYLKVLPINHLKIDRAFVADLPHNANDVAIARAIIALGHSLGFHIT 1082

Query: 1053 AEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEF 1087
            AEG+E  EQL FL   GC   QGYL  RP+P  +F
Sbjct: 1083 AEGIETQEQLEFLRGAGCDQGQGYLFGRPMPAADF 1117



 Score = 53.1 bits (126), Expect = 1e-10
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 17/210 (8%)

Query: 377 ARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFI 436
           A+L   +  I  R A    +I ++ E +  L+ SE +F +LF+ SPDP  + RQ  G F 
Sbjct: 289 AQLMGRNSFIRERNAELSREIAERKEIQASLAQSEGRFRTLFEHSPDPTWIVRQ--GCFS 346

Query: 437 EINPAFTQTFGWSS-AQVLGRTAEEIGLWAE-----SVERAKRIEQVIREQALSNVAVVL 490
           E N A  + FG+   +Q  G +  ++    +     S E+AK + ++   + L       
Sbjct: 347 EANAAALEMFGFKDFSQFRGISPIDLSPARQPDGQTSAEKAKAMMEIAVARGLHRFEWTH 406

Query: 491 NHRNGDPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAI 550
              +G      ++   + +++ P     +RDI+++++AEA L+            +P  I
Sbjct: 407 QRCDGSLFPAEVTLSAMQLNELPVLHAVVRDISERKQAEAELERQRSLLGAIVDHAPSLI 466

Query: 551 TITERHSGRYLEVNDGFCRLTGYSTDEVIG 580
                    Y+   +G  RL     ++VIG
Sbjct: 467 ---------YMFDTEGRLRLGNRLFEKVIG 487



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 39/333 (11%)

Query: 141 REITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPG-SQV 199
           REI  ++E + +L  SE RF TLF  SP+   + R+  G   E N    +MFG+   SQ 
Sbjct: 307 REIAERKEIQASLAQSEGRFRTLFEHSPDPTWIVRQ--GCFSEANAAALEMFGFKDFSQF 364

Query: 200 IGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEV-------QFRAT----SGKVHDGIL 248
            G + ++L     P+ +      T A     +ME+       +F  T     G +    +
Sbjct: 365 RGISPIDLSPARQPDGQ------TSAEKAKAMMEIAVARGLHRFEWTHQRCDGSLFPAEV 418

Query: 249 CTQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYG 308
               ++L  +  L +   D +ERK+AE  L+  +  L   +D A    + +     +  G
Sbjct: 419 TLSAMQLNELPVLHAVVRDISERKQAEAELERQRSLLGAIVDHAPSLIYMFDTEGRLRLG 478

Query: 309 SARAAQLHGLPPIP----FHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQ 364
           +    ++ G P         ESF +    V     + +      ++ G    ++      
Sbjct: 479 NRLFEKVIGRPRAAVEGLLRESFISPALAVQHRHNDEL-----VMQSGQPMRFE---EQA 530

Query: 365 LENGTSR-YIESRARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPD 423
            + G  R Y+ ++  L   D G    + G   DIT+  +  ++L  +      + + + D
Sbjct: 531 FDGGVQRTYLTTKCPLPGPD-GSLRGVLGISTDITEIKQTTEQLRLA----GVVMENTAD 585

Query: 424 PICVTRQDTGQFIEINPAFTQTFGWSSAQVLGR 456
            + +T    G  + +N AFT   G+++A+ LG+
Sbjct: 586 GVMIT-DARGVILSVNKAFTDITGYTAAEALGQ 617



 Score = 46.2 bits (108), Expect = 1e-08
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 520 RDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYST-DEV 578
           R+I +++  +A+L  SE +F   F  SPD   I  +  G + E N     + G+    + 
Sbjct: 307 REIAERKEIQASLAQSEGRFRTLFEHSPDPTWIVRQ--GCFSEANAAALEMFGFKDFSQF 364

Query: 579 IGHTVYEIG-IWADDKQRSA----LLAELRERGRVHHREMLGRNKRGDILTVEVSVEPIT 633
            G +  ++      D Q SA     + E+     +H  E   +   G +   EV++  + 
Sbjct: 365 RGISPIDLSPARQPDGQTSAEKAKAMMEIAVARGLHRFEWTHQRCDGSLFPAEVTLSAMQ 424

Query: 634 LNEVDCLLLTARDVSQLKNAQAQI 657
           LNE+  L    RD+S+ K A+A++
Sbjct: 425 LNELPVLHAVVRDISERKQAEAEL 448