Pairwise Alignments

Query, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  380 bits (975), Expect = e-109
 Identities = 235/577 (40%), Positives = 318/577 (55%), Gaps = 20/577 (3%)

Query: 516  VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYST 575
            V  + DIT+++R E  L+ +    AK F +S +A  +T+  +     VN  FC  TGYS 
Sbjct: 382  VGVMVDITERKRQEEELRLA----AKVFDTSNEAFLVTDADNN-IRSVNRAFCETTGYSA 436

Query: 576  DEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILT--VEVSVEPIT 633
            +EV+G     +     DK     + E          E+  R K G+I      ++V    
Sbjct: 437  EEVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQGEIYDRRKSGEIYPKWTRINVVKDD 496

Query: 634  LNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRG 693
               V   +    D+S  K  + +++ LA HD LT LPNR LL  RL Q +         G
Sbjct: 497  QGRVVNHVAVFSDISDRKALEERLQFLAQHDHLTGLPNRNLLRLRLEQAVESAMERGAGG 556

Query: 694  ----ALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLS 749
                ALL LDLDHFK INDSLGH  GD +L+ +  RL+  +R   T+ R GGDEF+++L 
Sbjct: 557  INPVALLLLDLDHFKTINDSLGHHAGDQLLRTVVKRLKNILRESSTLCRQGGDEFLIVLP 616

Query: 750  GLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRA 809
              +        +V   A+T+   LA P  +DG  L +T SIG++L PD G+    LLK+A
Sbjct: 617  QAQDLA-----RVSRAAETVLAALATPFEVDGHPLSITGSIGISLAPDDGSDFDTLLKKA 671

Query: 810  DIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRI 869
            D AL  AK SGRN  + F   M  +  ERL ++  L  AL R EL L++QPQ+D    R+
Sbjct: 672  DTALVHAKQSGRNAYRFFTEAMNVSTLERLTLQQRLHQALERQELVLYYQPQLDLASGRV 731

Query: 870  VGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADD 929
            VG E LLRW  P+ G  PP +FI + EE+GLI+ +G+W++ EAC      L  GL     
Sbjct: 732  VGVEALLRWRTPE-GLVPPGKFIPLAEETGLIVPMGAWVIQEACRQARTWLDAGL---PP 787

Query: 930  FNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKR 989
              + VN+S  QF +++ +  V  +L    LP   L LE+TE I+IQ+ E T++ +  +  
Sbjct: 788  MTMAVNLSALQFHRDNLLITVGDALSAASLPAASLELELTESILIQDAEATLATLKAMNA 847

Query: 990  YGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDL 1049
             GV  ++DDFGTGYSSL YLKR  VD LKIDQSFVRD   D + A IVRA+V MA SL L
Sbjct: 848  MGVLLSIDDFGTGYSSLAYLKRFTVDKLKIDQSFVRDITSDGDSAAIVRAVVQMASSLKL 907

Query: 1050 AVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPE 1086
              IAEGVE   Q A L   GC   QGYL++RP+P  E
Sbjct: 908  KTIAEGVETESQAAALRATGCDEVQGYLYARPMPAAE 944



 Score = 42.4 bits (98), Expect = 2e-07
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 17/208 (8%)

Query: 79  DLLPEE----DRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRP 134
           DL P+E      A  RQ+F       P +Q    +  + DGS H +  N +   D  GR 
Sbjct: 324 DLAPKELADIYAAADRQLFD-----NPGKQVYESQACYADGSKHDVIYNKATFMDAEGRV 378

Query: 135 Q-MIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFG 193
             ++GV+ +IT ++ +E  L  + K F T      N   L    D  I  VN+ F +  G
Sbjct: 379 AGLVGVMVDITERKRQEEELRLAAKVFDT-----SNEAFLVTDADNNIRSVNRAFCETTG 433

Query: 194 WPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVHDGILCTQGI 253
           +   +V+G+    L    + +  ++ +     + G    E+  R  SG+++        +
Sbjct: 434 YSAEEVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQGEIYDRRKSGEIYPKWTRINVV 493

Query: 254 ELE--GVTFLISTFVDTTERKRAEQALK 279
           + +   V   ++ F D ++RK  E+ L+
Sbjct: 494 KDDQGRVVNHVAVFSDISDRKALEERLQ 521



 Score = 40.4 bits (93), Expect = 6e-07
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 380 YRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEIN 439
           + D +G    + G ++DIT++  +E+ L  +    A +F  S +   VT  D      +N
Sbjct: 371 FMDAEGRVAGLVGVMVDITERKRQEEELRLA----AKVFDTSNEAFLVTDADNN-IRSVN 425

Query: 440 PAFTQTFGWSSAQVLGR 456
            AF +T G+S+ +VLGR
Sbjct: 426 RAFCETTGYSAEEVLGR 442



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 461 IGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPCSVTTLR 520
           + LW     R +RI    R     +    LN R G      I++     D+   S+   +
Sbjct: 209 LDLWV--TRRLQRISAAARRLGEGH----LNERIGMAGDDEIATLARQFDETAASLARKQ 262

Query: 521 DITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIG 580
           D  QQ  A+A L+   +       + P  +   +   GRY+  N+ F    G    E++G
Sbjct: 263 DALQQ--ADAQLQEHVQFMHTLIEAIPSPLFYKDAQ-GRYVGCNEAFLTYLGKERHELLG 319

Query: 581 HTVYEI 586
            +VY++
Sbjct: 320 KSVYDL 325