Pairwise Alignments

Query, 323 a.a., tRNA-dihydrouridine synthase C from Pseudomonas putida KT2440

Subject, 335 a.a., TIM-barrel protein, yjbN family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 64  PMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLHAIV 123
           P+ +QL GS+PV LA  A LA E G   ++LN GCP+  V   R GA L+ EPEL+   V
Sbjct: 68  PLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECV 127

Query: 124 REVRRAVPANIPVTSKMRLGFDSPDG---ALECATALAEGGSAHLVVHAR--------TK 172
             +++ V  +IPVT K R+G D  D           +   G    ++HAR         K
Sbjct: 128 DAMKQVV--DIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPK 185

Query: 173 VEGYKPPAHWEWVARV-QDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPD 231
                PP  ++ V ++ +D   + +  NG I +++  +    +   + +M+GR     P 
Sbjct: 186 ENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQ--THLQHLDGVMVGREAYQNPY 243

Query: 232 LGLQI 236
           +  Q+
Sbjct: 244 MLAQV 248