Pairwise Alignments

Query, 323 a.a., tRNA-dihydrouridine synthase C from Pseudomonas putida KT2440

Subject, 322 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (288), Expect = 1e-30
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 12/231 (5%)

Query: 2   QIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVCDRLLPAS-SFDKLAPELRQGARTA 60
           Q+ +APM G+ D   R++  R G     V+E +     +     S  ++     +G R+ 
Sbjct: 11  QLIVAPMAGVTDQAFRNLCLRYGAA-LAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRS- 68

Query: 61  AGVPMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLH 120
                 VQ+ G+DP  +A+ A    E GA +ID+N GCPAK VNK   G+ L++ P L+ 
Sbjct: 69  ------VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVK 122

Query: 121 AIVREVRRAVPANIPVTSKMRLGFDSPD-GALECATALAEGGSAHLVVHARTKVEGYKPP 179
            I++ V  AV  ++PVT K+R G++      ++ A    + G A L VH RT+   YK  
Sbjct: 123 DILQAVVAAV--DVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGN 180

Query: 180 AHWEWVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRP 230
           A ++ +  ++  V +PV ANG+I + +  R   + +G + +M+GRG   RP
Sbjct: 181 AEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRP 231