Pairwise Alignments

Query, 1085 a.a., putative helicase from Pseudomonas putida KT2440

Subject, 1005 a.a., DEAD/DEAH box helicase from Rhodanobacter denitrificans FW104-10B01

 Score = 45.1 bits (105), Expect = 3e-08
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 44/251 (17%)

Query: 230 DWAKSYLDSLFEADPLNLWPSQRQGIAQALYLLDT-VGAVLVADATGSGKT-RMGAHLIR 287
           D A+   D++ +   + L P QR+G+     L +  VG VL AD  G GKT ++  HL+ 
Sbjct: 524 DAAERASDAVPDGLTVELRPYQREGLRWLNALAEAGVGGVL-ADDMGLGKTLQLITHLL- 581

Query: 288 TIHDRNWSLARARKSSMLLICPPLVRKNWDWETAKCG----------------------Y 325
                +     A     L++ P  +  NW  E A+                         
Sbjct: 582 -----SLKQGGALTQPALIVVPTSLIPNWQSEIARFAPMLHVLTLHGPQRAEEFAQLGAQ 636

Query: 326 NIAITSHGLLSRLNPEDESSLAIHLSSAQILAVDEAHNFLNQGSRRTRTLKFNLADQVVL 385
           +I +TS+ LL R        +A+      ++ +DEA    N  ++  R L      + V 
Sbjct: 637 DIVLTSYALLPR------DVVALRKQPFALIVLDEAQQVKNPRTQARRALLSLRTPRYVC 690

Query: 386 FTATPINRSIADLLRLIDILGADNFDDDVLAVFERLTGFGHGGAETRDDDIPQ--LQAGI 443
            T TP+   + +L   +D+       D+  + F R   F     E + D+  Q  L   I
Sbjct: 691 LTGTPLENHLGELWSQVDLAVPGLLGDE--SAFRR---FYRIPIEKQHDEECQQRLNLRI 745

Query: 444 GSFVVRRTKAQ 454
             F++RR+KAQ
Sbjct: 746 APFILRRSKAQ 756



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 634 LERLERMSGHREKRKVQFLME----LLDRHDHILAFDHYPITLRYFQHLLDQKRSDHRPF 689
           L +LE   G  E  K + LM+    LLD    +L F  +   L+     LD++R  +   
Sbjct: 824 LVKLEAARGVHESAKFELLMDMLPALLDEGRKVLLFSQFTGMLKLIAAELDRRRIRYVTL 883

Query: 690 SVLLGIGGNRRSHEHIQSLLNPNAKSEGKLIVLCSEALSESVNLQRASTLVHLD---MPS 746
           +     G  R   E +Q   N     E  L +L  +A    +NL  A T++H D    P+
Sbjct: 884 T-----GDTRDRAEPVQRFQN----GEVPLFLLSLKAGGVGLNLTAADTVIHYDPWWNPA 934

Query: 747 VVRIAEQRVGRI 758
               A  R  RI
Sbjct: 935 AEAQASDRAHRI 946