Pairwise Alignments

Query, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

Subject, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (263), Expect = 8e-28
 Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 16/226 (7%)

Query: 97  IVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQLRPD--AKELELVHRLDRDTSGLLM 154
           IVY+D+ L+ +NKPAG+ VH  S L     E + Q   D   + +  +HRLDR TSG+L+
Sbjct: 4   IVYQDEYLVAVNKPAGMLVHR-SWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLV 62

Query: 155 IAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSKKQVNAPLLKSNLRSGERMVEVNEE 214
            A    +   +        ++K Y A+VRG W      ++ PL +   +  ++  + ++E
Sbjct: 63  FALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKE 121

Query: 215 GKEALTLFRVLRRF------GDFAT----IVEARPITGRTHQIRVHTLHAGHMIAGDSKY 264
            + A+T +R L +       G FAT    ++E +P TGR HQ+R H  H  H I GD+ +
Sbjct: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181

Query: 265 GDEDFSREIRE-LGGKRLFLHAYALTVPLPDGGE-LKLEAPVDEVW 308
           GD   +R  RE    +RL LHA  L    P   + L + A +DEVW
Sbjct: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVW 227