Pairwise Alignments

Query, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

Subject, 822 a.a., fimbrial usher protein from Klebsiella michiganensis M5al

 Score =  275 bits (704), Expect = 6e-78
 Identities = 222/787 (28%), Positives = 372/787 (47%), Gaps = 63/787 (8%)

Query: 59  LSMLTSDQGLAPGRYRVEVQVNLEPAGQHELDFQPGPDGE-LQPCLPARLLGEWGMRLDA 117
           L+   +D  + PG Y +++++N +  GQ ++ +    D +  Q C+   +L    ++ DA
Sbjct: 46  LTRFATDNYVPPGEYLLDIKINGQAVGQQKVRYLASKDQKHTQACINGEILARLALKEDA 105

Query: 118 LANPEDQASACLDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGINA 177
                   + C DLL++ PGA +      L   I++PQ  M+ N  N   P RWD GI  
Sbjct: 106 QQKVAQPFADCYDLLSL-PGATLSNYAGVLD--ITVPQAWMKYNDPNWTPPERWDQGIGG 162

Query: 178 AFINYQASTLNGRNRSSGR-YTSNDLYLNSGINLGEWRLRST-QSWRQGSQGKTEWTRAQ 235
             ++Y  +    R       Y++   Y  +G+NLG WRLR   Q+    +  + ++   Q
Sbjct: 163 FLLDYSLTGQYTRQLDMHEDYSTLSGYGQTGVNLGGWRLRGEYQTSYYSATHQFDFDMNQ 222

Query: 236 TYAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYAPIIRGVAQS 295
            YA R +P   A LT GE + D +VF +V  +G+ +ASD   L  N +GYAP IRG+A++
Sbjct: 223 IYAYRPLPMMAAKLTAGEIYLDSQVFDTVRFTGLNLASDERQLPPNLQGYAPEIRGLAKT 282

Query: 296 RAKVEIWQHGYPIYSTYVSAGPYAIDDLSTAGSGELEVVVTEADGQVRRFIQPYSTMSNL 355
            AKV + Q G  IY T V AGP+ I DL ++  G L+V V E DG +  F    + +  L
Sbjct: 283 NAKVTVKQSGRIIYETTVPAGPFNIQDLRSSVRGTLDVQVEEQDGSISTFQVNTANIPYL 342

Query: 356 LRPGVWRYSATVG---RYNPSSDLETPLLWQGTLAVGSYWDTTVYGGLM-ASEFYRAGNL 411
            RPG  RY+  +G   RY  S  ++ P    G  + G     ++YGGL  A   Y A + 
Sbjct: 343 TRPGYVRYNVAIGAPSRY--SHKIQGPGFASGDFSWGITNAWSLYGGLQSAGAEYTAVSA 400

Query: 412 GFSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFTT-QTNLRFAGYRYST 470
           G  +DL  LGA++ D T++ S    ++++ ++G+S+ L YAK F    +++ FAGYR+S 
Sbjct: 401 GIGRDLSVLGALSLDATESYS--QQSNQKRLKGTSFKLSYAKTFDEYNSSITFAGYRFSQ 458

Query: 471 QGYRDFDEVVRQRSQDTTFSGSRRSRLEASVHQSL-----GRTSSLTLTLSQQDYWRSNA 525
           + +R F + + +R +     G  +     + +++      G+ +++ LT + Q+YW  ++
Sbjct: 459 EDFRSFSQYLNERYEGYDSLGREKEVYTITGNKTFWANEPGKATTVFLTYTHQNYWNRSS 518

Query: 526 TQR---QYQFNFNTQH-RGVGYNLFASQSLTDRYG-NDRQFGLSVTVPLHFGHRANATFD 580
             R       +FN  + RG+  N+ A +S  D  G  D     S+++P+  G    +  D
Sbjct: 519 QDRYGISLGRSFNVGNIRGITTNISAYRS--DYEGRKDDSIAFSLSIPV--GDSKWSGLD 574

Query: 581 LQHNANGYSQRATLSGSDSARALSYSTSLSRDEHARKTAALSLGHQAPYASVSAGYT--- 637
           +Q N NG           ++  LSY+ S   +   R  A  S   Q+ YA+V   Y    
Sbjct: 575 VQTN-NG----------KTSPMLSYTDSSDYNNLWRLRAGAS---QSGYANVDGYYQRRS 620

Query: 638 -----------EADNYRSLSLNASGAVLLHADGLEF---GRYLGDTAALIEVPGVANVGL 683
                      + D+Y SLS    G       G      G  L     ++   G+ +V L
Sbjct: 621 QYAEINSNASYQQDHYLSLSSTLRGGFTATRHGAAIHNSGATLNTARVMVNTNGIGDVPL 680

Query: 684 QNATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFE 743
            N   +RTN+ G A++P +  Y +    ++ D +   +E    I+     +GA+    F 
Sbjct: 681 -NDGKSRTNNFGIAVIPDIVSYNSFDTRVDVDAMSESIEPAKAISTATLTEGAIGYQTFG 739

Query: 744 ARRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQEQPLQVSWGEQ 803
             +  +++  +    G   PFGA+V+  +G  + M+ + G   L   +  + L V W  +
Sbjct: 740 MAQGEKMMGIIRLADGTYPPFGAEVINGDGVSVSMIMEGGQGWLAGVNPHELLSVVWSGK 799

Query: 804 PNAGCQV 810
               CQ+
Sbjct: 800 KQ--CQI 804