Pairwise Alignments

Query, 785 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 919 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  240 bits (612), Expect = 3e-67
 Identities = 180/540 (33%), Positives = 272/540 (50%), Gaps = 42/540 (7%)

Query: 279 KASNSSLSLSNQELEQARSRALDMAQARAAFLANMSHEIRTPLNGMLGMIALALDNPLPS 338
           ++  S +     EL+ A+ RA   +QA++ FL+ +SHE+RTP+N ++G + L        
Sbjct: 379 RSLESRVKQRTTELQLAKERAEIASQAKSEFLSMISHELRTPMNAVIGALELLSLADKSG 438

Query: 339 EQRQQLAIAHDSGKVLVELLNDILDLSKFDAGQLELERIAFDMGSMVEDTANLLSQNTA- 397
           E+R  +  A  S   L+ +LNDILD++K ++G+++LE+  F +  ++ D     S   + 
Sbjct: 439 EERDLIETASTSANNLIYILNDILDINKIESGKMQLEQQDFHLAGVIADLIKSFSPVASR 498

Query: 398 QSVELTCLIASDFPSSVLGDPTRVRQIVSNLLSNALKFT-----RFGRVDVRLAA----- 447
           Q +      A + P  V GD  +VRQI+SNLLSNA+KFT     + G V + +       
Sbjct: 499 QGLRFAVQEALELPDWVEGDIVKVRQILSNLLSNAMKFTHSTQEQTGCVSLNITVGEQND 558

Query: 448 IVGGVRLEVRDTGIGIPEDAQARIFQPFTQAGAGITRQYGGTGLGLALTRNLCKAMQGHL 507
           IV  VR  V D GIGI +  Q R+F PF QA    TR YGGTGLGLA+   L   M G +
Sbjct: 559 IVTRVRFTVTDNGIGIDKATQKRLFTPFVQAQRSTTRNYGGTGLGLAICGKLTNLMGGSI 618

Query: 508 HIRSEPGFGSCFTAELPL--TVHTEAIPPAPLHG-RVAALSAAGSGLNELLQHLLPAWGL 564
            ++SE G G+ F  ELP     H E       H   +  L    + L+ + Q L    G 
Sbjct: 619 SLKSELGQGAQFCVELPFWRAHHHEQTQELSEHTIGMVNLGQPQTTLDWIKQCLTDKGGR 678

Query: 565 T--YQRHD-SCATLVAAVIDLLITDDVEHLFELRPALKTPILLVTAYGNF---LPNEQSL 618
              YQ       TL   ++ +L T + + L  L     +P      + N+   LP  Q  
Sbjct: 679 VKCYQAEQLGIDTLALPLVIILATGEADELRFLANQAASP----KGHSNWLVALPQHQRK 734

Query: 619 ALAPL---------HQLARPLARNALYQTLRRTLQGHEPEHPLAI-PAITQE-----QGR 663
           AL            + L++ L   A+++ L   L     E  L +   +TQE     +G 
Sbjct: 735 ALTQTIPQIDSLDSYLLSKALLLKAVHKRLNTGLAIDLDEMELDLCDPLTQEPMPGLKGD 794

Query: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723
           A IL+VEDNP+NQ +    L  LG +  LA  G   + L    ++ L+L DC+MP +DGY
Sbjct: 795 ADILVVEDNPLNQKLILKQLDMLGYRCNLAEDGLAGVHLWQSADYKLILTDCHMPNLDGY 854

Query: 724 EASRRIRQ---SGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHW 780
           + S++IRQ   S +   +PIVA+T  AM  E + C  +GMND+++KP +  +L  ++  W
Sbjct: 855 DMSKQIRQIENSTQRKSVPIVAITGAAMATELDDCYRSGMNDFVSKPVQLRDLKKVIQKW 914