Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 492 a.a., DEAD/DEAH box helicase from Synechocystis sp000284455 PCC 6803

 Score =  327 bits (837), Expect = 9e-94
 Identities = 183/424 (43%), Positives = 272/424 (64%), Gaps = 6/424 (1%)

Query: 5   TGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPI 64
           T  FA L L+      +   G+E P+ IQ ++IP++L+G DM+ Q+QTGTGKTAAFALP+
Sbjct: 6   TSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPL 65

Query: 65  LNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124
           +++ID  + + QALIL PTRELA QVA A + ++ +   + ++ VYGG  +  Q+R++  
Sbjct: 66  MDRID-PEGDLQALILTPTRELAQQVAEAMKDFSHERR-LFILNVYGGQSIERQIRSLER 123

Query: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184
           G QIVV TPGR+ D + R +  L T+Q++VLDEADEML +GF+DD++ I    P TRQT 
Sbjct: 124 GVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTA 183

Query: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHAD-QKIPAVLRLLEVE 243
            FSAT+P  I+ +  + L +P  V ++    T T IEQ    V     K  A+  +LE+E
Sbjct: 184 CFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEME 243

Query: 244 EFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATD 303
           + ++ I FVRTKQ   DL + L+  G+     +G+++Q+QRER++   +DG++ +VVATD
Sbjct: 244 DPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATD 303

Query: 304 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERV 363
           +AARGLDV  ++HV N D+P + E+Y+HRIGRTGRAG+ G+A+ LV P +RR+L+ IE  
Sbjct: 304 IAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIENR 363

Query: 364 TGQKVAEARLPNAQAVLDARIKKLTSSL-APLVAEAEATHGELFDRLTTDLGCSARALAS 422
             Q++    +PN   V   RI+KL   L   L  E  A+   L   L+ +    A+A+A+
Sbjct: 364 LKQQIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEY--DAQAIAA 421

Query: 423 ALLR 426
           A L+
Sbjct: 422 AALQ 425