Pairwise Alignments

Query, 312 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (434), Expect = 1e-47
 Identities = 106/298 (35%), Positives = 162/298 (54%), Gaps = 5/298 (1%)

Query: 3   MESFSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTLTE 62
           ME FSAL  F+   E GSF+ A ++L L+ +A+ K ++QLE  LG++L QR+TR L+LT+
Sbjct: 1   MEHFSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTD 60

Query: 63  AGQRFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRYPA 122
           AG R+   +  + +  Q  +  ++  +  P G+LR+S+  VFGRLY+ PL+ EFL+RYP 
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 123 ITPDWHFDNRQVDLIGQGFDAAIGGGFELP-PGVVARKLTPAHRVLVAAPAYLQRHASIE 181
           I      D++  DLI  GFD AI  G ELP   ++ARK+ P   V+ A+PAYL +H    
Sbjct: 121 IQLQMQMDDKITDLIAGGFDLAIRIG-ELPDSSLIARKIAPCLSVICASPAYLTQHGLPM 179

Query: 182 DPQALQRHDGILVRSPQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQGLGI 241
            P  L +H+ +     Q G   S+      Q  QP   +    +++SDA       GLGI
Sbjct: 180 TPCELTQHNCLFYSYFQDGVEWSFHSPDGMQRVQP---KGNYQVNNSDAINQACLDGLGI 236

Query: 242 ALVSLPFAVPYLLAGRLLRVLPDWYVDDGHISLYFAEHKLLPGKTRAFIDFVVEQFAE 299
           A +      P L  G L  +L D+ + +  I   + + K  P K    I+F++ +  +
Sbjct: 237 ANLPRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAKLGQ 294